DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mys and pat-3

DIOPT Version :9

Sequence 1:NP_001284997.1 Gene:mys / 44885 FlyBaseID:FBgn0004657 Length:846 Species:Drosophila melanogaster
Sequence 2:NP_497787.1 Gene:pat-3 / 175504 WormBaseID:WBGene00003930 Length:809 Species:Caenorhabditis elegans


Alignment Length:866 Identity:366/866 - (42%)
Similarity:498/866 - (57%) Gaps:95/866 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 ALLMIAILAAIAGQTDAQKAAKLT------AVSTCASKEK----CHTCIQ-TEGCAWCMQPDF-- 63
            :||::|.|...|......|..::|      :...|.|..:    |..||| .|.||||..|.|  
 Worm     6 SLLLLAALLPFALPASDWKTGEVTGKVVEKSEFPCYSLSRDNYTCSACIQYHESCAWCGAPMFDE 70

  Fly    64 -KGQSRCYQNTSSL---CPEEFAYSPITVEQILVNNKLTNQYKAELAAGGGGSAMSGSSSSSYSS 124
             |..:||......:   ||..:...|.|...|..::||::|.:.|                    
 Worm    71 KKPYARCDSRAKLMEHGCPNSYIEDPATKLDITEDSKLSDQGQVE-------------------- 115

  Fly   125 SSSSSSFYSQSSSGSSSASGYEEYSAGEIVQIQPQSMRLALRVNEKHNIKISYSQAEGYPVDLYY 189
                                    |..|.|||:||.|.:.:|...:....::|.||..|||||||
 Worm   116 ------------------------SEEEAVQIKPQEMYVEIRPKSRVRFNVTYRQAVDYPVDLYY 156

  Fly   190 LMDLSKSMEDDKAKLSTLGDKLSETMKRITNNFHLGFGSFVDKVLMPYVSTIPKNLVEPCAN-CT 253
            |||||.||:|||.|||.|||.|:|.|:.:|.||.||||||:||.|||::....:..:.||.. |.
 Worm   157 LMDLSYSMKDDKQKLSELGDLLAERMRTVTKNFRLGFGSFIDKKLMPFIDPRIEKQLSPCPTPCA 221

  Fly   254 ATYGFHHQMVLDKNITQFTNEVKNATVSGNLDAPEGGFDAIMQAIACRSQIGWREQARRLLVFST 318
            ..|||.|||.|..|..:|..||..|.:|||||||||||||::||:||...|||||:||:::||||
 Worm   222 EPYGFKHQMSLTTNTAKFKAEVDKAEISGNLDAPEGGFDAVVQALACNKTIGWRERARKMIVFST 286

  Fly   319 DAGFHYAGDGKLGGVIAPNDGECHLSPKGEYTHSTLQDYPSISQINQKVKDNAINIIFAVTASQL 383
            |||||:||||:|.||:.||||.|||..:|.||.:..||||||:.::|.:||...|:|||||.:..
 Worm   287 DAGFHFAGDGRLAGVVEPNDGTCHLDREGYYTETLNQDYPSIALLHQMIKDRKANVIFAVTKNNQ 351

  Fly   384 SVYEKLVEHIQ--GSSAAKLDNDSSNVVELVKEEYRKISSSVEMKDNATGD--VKITYFSSCLSN 444
            .:|.:|...:.  .||...|.|||.|:|:|:::||.|||..:.|.|||...  :|:||.|.||..
 Worm   352 DLYTQLSNALPDVSSSVGVLANDSRNIVDLIEKEYLKISEKIIMVDNANASEGLKLTYRSMCLDG 416

  Fly   445 GPEVQTSKCDNLKEGQQVSFTAQIQLLKCPEDPRDWTQTIHISPVGINEVMQIQLTMLCSCPCEN 509
            .....|:.|:.::.|.:|.|...::...| .|.||:  .:.|.|.|::|.:.:.:.:||.|.||.
 Worm   417 TTLKDTNVCEGIRVGDEVQFEVTLENTHC-IDKRDF--VLRIGPSGLDETLIVNVKVLCDCDCER 478

  Fly   510 PGSIGYQVQANS--CSGHGTSMCGICNCDDSYFGNKCECSATDLTSKFANDTSCRADSTSTTDCS 572
            ..    ::..||  |:| |..:||:|.|.....|..|||:...:::...|: .|:..:.|.. |.
 Worm   479 QD----RIVTNSADCNG-GDMVCGVCRCKGGNVGKYCECNRPGMSTAALNE-KCKRTNESAI-CE 536

  Fly   573 GRGHCVCGACECHKRPNPIEIISGKHCECDNFSCERNRNQLCSGPDHGTCECGRCKCKPGWTGSN 637
            |||.|.||.|||:.|.||.|.|||:.||||||:|.|:..::|:  :||.|.||:|.|.|||||..
 Worm   537 GRGVCNCGRCECNPRANPEEQISGEFCECDNFNCPRHDRKICA--EHGECNCGKCICAPGWTGRA 599

  Fly   638 CGCQESNDTCMPPGGGEICSGHGTCECGVCKCTVNDQG-RFSGRHCEKCPTCSGRCQELKDCVQC 701
            |.|..|.|:|: ...|:||:|.|.|.||.|:|..:..| |:||..||.||||..:|.|.|:||.|
 Worm   600 CECPISTDSCL-SANGKICNGKGECICGRCRCFDSPDGNRYSGAKCEICPTCPTKCVEYKNCVMC 663

  Fly   702 QMYKTGELKNG--DDCARNCTQFVPVGVEKVEIDETKDEQMCKFFD-EDDCKF--MFKYSEQGE- 760
            |.::||.|...  |.|     :|..:.||  |:....:...|:|.| .|||.|  ::.|.|..: 
 Worm   664 QQWQTGPLNETACDQC-----EFKVIPVE--ELPNLNETTPCQFVDPADDCTFYYLYYYDEATDN 721

  Fly   761 LHVYAQENKECPAKVFMLGIVMGVIAAIVLVGLAILLLWKLLTTIHDRREFARFEKERMNAKWDT 825
            ..|:.:::|:||..|.:|.||:||||.||::|:.:||||||||.:|||.|:|.|..||:.|||||
 Worm   722 ATVWVRKHKDCPPPVPVLAIVLGVIAGIVILGILLLLLWKLLTVLHDRSEYATFNNERLMAKWDT 786

  Fly   826 GENPIYKQATSTFKNPMYAGK 846
            .|||||||||:|||||:||||
 Worm   787 NENPIYKQATTTFKNPVYAGK 807

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mysNP_001284997.1 INB 45..505 CDD:197563 196/475 (41%)
Integrin_B_tail 692..773 CDD:285239 28/86 (33%)
Integrin_b_cyt 803..843 CDD:285884 28/39 (72%)
pat-3NP_497787.1 INB 49..474 CDD:197563 196/471 (42%)
Integrin_B_tail 654..735 CDD:285239 29/87 (33%)
Integrin_b_cyt 767..804 CDD:285884 27/36 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160159998
Domainoid 1 1.000 282 1.000 Domainoid score I874
eggNOG 1 0.900 - - E1_KOG1226
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H22999
Inparanoid 1 1.050 668 1.000 Inparanoid score I385
Isobase 1 0.950 - 0 Normalized mean entropy S3795
OMA 1 1.010 - - QHG48224
OrthoDB 1 1.010 - - D223415at33208
OrthoFinder 1 1.000 - - FOG0001086
OrthoInspector 1 1.000 - - oto18116
orthoMCL 1 0.900 - - OOG6_100678
Panther 1 1.100 - - LDO PTHR10082
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2712
SonicParanoid 1 1.000 - - X739
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1716.750

Return to query results.
Submit another query.