DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mys and itgb8

DIOPT Version :9

Sequence 1:NP_001284997.1 Gene:mys / 44885 FlyBaseID:FBgn0004657 Length:846 Species:Drosophila melanogaster
Sequence 2:XP_002933344.3 Gene:itgb8 / 100494899 XenbaseID:XB-GENE-950732 Length:808 Species:Xenopus tropicalis


Alignment Length:861 Identity:242/861 - (28%)
Similarity:375/861 - (43%) Gaps:182/861 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 RCQLALL-MIAILAAIAGQTDA-QKAAKLTAVSTCASKEKCHTCIQTEGCAWCMQPDFKGQS--- 67
            ||.:::| ...:|..:.|...: :.....::.:|||   || ..:..| |.||.|.||...|   
 Frog    69 RCFMSILRAFGLLFLLLGLCQSVENRCSSSSATTCA---KC-LALGPE-CGWCTQEDFMMDSTEN 128

  Fly    68 -RCYQNTSSLCPEEFAYSPITVEQILVNNKLTNQYKAELAAGGGGSAMSGSSSSSYSSSSSSSSF 131
             ||                                         .:|::..|......|....:.
 Frog   129 ERC-----------------------------------------DTALNLKSKGCRQDSIEYPTA 152

  Fly   132 YSQSSSGSSSASGYEEYSAGEIVQIQPQSMRLALRVNEKHNIKISYSQAEGYPVDLYYLMDLSKS 196
            ::|..|...:.|           |:.|..:.:.:|...|.|..:.......||:|:|||:|:|.|
 Frog   153 HAQPLSSRDTNS-----------QVTPAEVSVHIRPGAKVNFMLKVHHLRKYPLDIYYLVDISAS 206

  Fly   197 MEDDKAKLSTLGDKLSETMKRITNNFHLGFGSFVDKVLMPYVSTIPKNLVEPCA----NCTATYG 257
            |....|:|:::|..||:.|...:::...||||||||.:.||:|..|:.:...|:    .|...:|
 Frog   207 MHKSIARLNSVGFDLSQKMANFSDDIKYGFGSFVDKPVSPYISVHPQKIKNQCSVVDLVCMPPHG 271

  Fly   258 FHHQMVLDKNITQFTNEVKNATVSGNLDAPEGGFDAIMQAIACRSQIGWREQARRLLVFSTDAGF 322
            :.:.:.|..|.|:|.|.|....::||:|.|||.|:|::||..|.:.||||::||.||:..||...
 Frog   272 YINVLPLTYNTTKFKNVVGKQRIAGNIDNPEGAFEAMLQAAVCNTDIGWRKEARHLLILMTDQTS 336

  Fly   323 HYAGDGKLGGVIAPNDGECHLSPKGEYTHSTLQDYPSISQINQKVKDNAINIIFAVTASQLSVYE 387
            |.|.|.||.|::.||||.|||. ...|..|:..:|||:..:.:|:.:|.|:.:|||...|.:.|:
 Frog   337 HLALDSKLAGIVTPNDGSCHLK-DNVYIRSSDMEYPSLGLLGEKLTENHISGVFAVQGPQFNWYK 400

  Fly   388 KLVEHIQGSSAAKLDNDSSNVVELVKEEYRKISSSVEMK-DNATGDVKITYFSSCLSNGPEVQTS 451
            .|:..|.|::|.:||..:||:..||.:.|:.:.|.|::: ||....:.:...:.|..........
 Frog   401 DLLPLIPGTTARQLDPFASNMKNLVFDAYKMLLSEVKIEVDNPIKGIHVHVTAICPDGTRRSGKE 465

  Fly   452 KCDNLKEGQQVSFTAQIQLLKCP-EDPRDWTQTIHISPVGINEVMQIQLTMLCSCPCENPGSIGY 515
            .|.|:|..::|.|...:.:..|. .:.||:   |.:.|:|.||...|::...|:|.|        
 Frog   466 GCQNVKANEKVFFNVTLTMDSCDVHNGRDY---IVLRPLGFNETAIIKVHRDCTCQC-------- 519

  Fly   516 QVQANSCSGHGTSMCGICNCDDSYFGNKCE--------CSATDLTSKFANDTSCRADSTSTTDCS 572
                ||.|    ...|.|..|||   ..|:        ||:.:|.|.   ..|||| |.|...||
 Frog   520 ----NSVS----QAKGKCVTDDS---TDCQTTPCKEEICSSDELDSA---SESCRA-SPSQPVCS 569

  Fly   573 GRGHCVCGACECHKRPNPIEIISGKHCECDNFSCERNRNQLCSGPDHGTCECGRCKCKPGWTGSN 637
            |||.|:||.|.|.|  ..:..|.||:||.|.|||..:..:||||  :|.||.|:|:|..||....
 Frog   570 GRGVCLCGKCFCQK--TKLGAIYGKYCEKDTFSCPYHHGKLCSG--NGDCEDGKCRCFNGWESDR 630

  Fly   638 CGCQES-NDTCMPPGGGEICSGHGTCECGVCKCTVNDQGRFSGRHCEKCPTCSGRCQELKDCV-- 699
            |.|..| ...|| ...|.:|||.|.|:||.|:||  |...| |..|:.| |.:..|:..:...  
 Frog   631 CHCASSLRKHCM-NSKGLVCSGRGVCQCGKCECT--DAKSF-GPLCQYC-TDNWNCEHFQGSANV 690

  Fly   700 ---QCQMYKTGELKNGDDCARNCTQFVPVGVEKVEIDETKDEQMCKFFDEDDCKFMFKYSEQGEL 761
               :..:|:|.       ||.                                           |
 Frog   691 SEPEGNLYETA-------CAL-------------------------------------------L 705

  Fly   762 HVYAQENKEC--PAKVFMLGIVMGVIAAIVLVGLAILLLWKLLTTIHDRREFARFEKERMNAKWD 824
            ..|..:..||  ..::..|..::.::.  .|:|:..:||.:.:...|.:      .::|....:.
 Frog   706 VYYIDQTSECFSDPRILTLFFIISIVT--FLLGILTVLLTRHIILHHHK------TRDRSTPSYR 762

  Fly   825 TGENPIYKQATSTFKN 840
            |   |..|:..|...|
 Frog   763 T---PTNKKDKSVLHN 775

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mysNP_001284997.1 INB 45..505 CDD:197563 138/469 (29%)
Integrin_B_tail 692..773 CDD:285239 9/87 (10%)
Integrin_b_cyt 803..843 CDD:285884 7/38 (18%)
itgb8XP_002933344.3 vWFA 102..517 CDD:412136 141/475 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 70 1.000 Domainoid score I9382
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D223415at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.