DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mys and itgb3b

DIOPT Version :9

Sequence 1:NP_001284997.1 Gene:mys / 44885 FlyBaseID:FBgn0004657 Length:846 Species:Drosophila melanogaster
Sequence 2:NP_001076417.1 Gene:itgb3b / 100001836 ZFINID:ZDB-GENE-071207-2 Length:790 Species:Danio rerio


Alignment Length:829 Identity:331/829 - (39%)
Similarity:460/829 - (55%) Gaps:87/829 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 STCASK--EKCHTCIQTE-GCAWCMQPDF----KGQSRCYQNTSSLCPEEFAYSPITVEQILVNN 95
            :.|.|:  ..|..|:... .||||.|.||    .|.|||                 .:::.||. 
Zfish    28 NVCTSRGASTCQQCLAVHPTCAWCFQEDFGQDVPGSSRC-----------------DLKRNLVE- 74

  Fly    96 KLTNQYKAELAAGGGGSAMSGSSSSSYSSSSSSSSFYSQSSSGSSSASGYEEYSAGEIVQIQPQS 160
                       ||....|:...:|..:...:..   .|..:|||::          ::.||||||
Zfish    75 -----------AGCNKGALEYPTSKMHVKENED---LSDKASGSTT----------DVTQIQPQS 115

  Fly   161 MRLALRVNEKHNIKISYSQAEGYPVDLYYLMDLSKSMEDDKAKLSTLGDKLSETMKRITNNFHLG 225
            :.::||.::....|:...|.|.||||||||||||.||.||.::|..||..|:|.|.:.|:|..:|
Zfish   116 IHISLRPDDSQVFKLKVRQVEDYPVDLYYLMDLSYSMNDDLSQLRRLGRGLAEEMSKTTSNLRMG 180

  Fly   226 FGSFVDKVLMPYVSTIPKNLV-EPCAN----CTATYGFHHQMVLDKNITQFTNEVKNATVSGNLD 285
            ||:||||.:.||:...|:..| .||.:    |...:|:.|.:.|.:.:.:||.|||...||.|.|
Zfish   181 FGAFVDKPVSPYMYISPEEAVLNPCYSIPYKCQPQFGYRHVLSLTEEVNRFTEEVKKQKVSRNRD 245

  Fly   286 APEGGFDAIMQAIACRSQIGWREQARRLLVFSTDAGFHYAGDGKLGGVIAPNDGECHLSPKGEYT 350
            |||||||||:||..|:.:||||..|..||||:|||..|.|.||::.|::.||||:|::.....|.
Zfish   246 APEGGFDAIIQAAVCKDKIGWRPGASHLLVFTTDAKTHVALDGRMAGIVRPNDGQCYVGRDNIYN 310

  Fly   351 HSTLQDYPSISQINQKVKDNAINIIFAVTASQLSVYEKLVEHIQGSSAAKLDNDSSNVVELVKEE 415
            .||..||||::.|.:|:.:|.||:|||||:...|:|:...|.|.|::...|..||.||::|:::.
Zfish   311 MSTTMDYPSLALITEKMSENNINLIFAVTSHVESLYKNYSELIPGTAVGTLSEDSHNVIQLIQDA 375

  Fly   416 YRKISSSVEMK-DNATGDVKITYFSSCLSNGPEVQ-TSKCDNLKEGQQVSFTAQIQLLKCPEDPR 478
            |.|:.|.||:: .|...::.:|:.::|| ||..:. ...|..||.|..|||:.:.:...||::.|
Zfish   376 YAKLRSKVELELLNVPEELSLTFNATCL-NGEVIPGLRSCSGLKRGDTVSFSVEARARGCPKEKR 439

  Fly   479 DWTQTIHISPVGINEVMQIQLTMLCSCPCENPGSIGYQVQANSC-SGHGTSMCGICNCDDSYFGN 542
               :|..|.|||..:.:||.:...|.|.|:...    :.::..| .|:||..||||.|.....|.
Zfish   440 ---KTFTIKPVGFKDTLQITVNFECECKCQAKA----EPESPVCHHGNGTYECGICLCHPGRLGP 497

  Fly   543 KCECSATDLTSKFANDTSCRADSTSTTD---CSGRGHCVCGACECHKRPNPIEIISGKHCECDNF 604
            :|||:..|.       :....|:.|..|   |||||.||||.|.||.  |....:.||.||||:|
Zfish   498 RCECAEGDY-------SPTEQDACSGPDKVICSGRGDCVCGQCVCHN--NDFGKVWGKRCECDDF 553

  Fly   605 SCERNRNQLCSGPDHGTCECGRCKCKPGWTGSNCGCQESNDTCMPPGGGEICSGHGTCECGVCKC 669
            ||.|.:.:||||  ||||.||.|:|.|.|.|.||.|....|||| ...|.:|||.|.|.||.|:|
Zfish   554 SCLRYKGELCSG--HGTCYCGFCQCDPDWKGENCNCSTRTDTCM-SSLGLLCSGRGQCVCGSCEC 615

  Fly   670 TVNDQGRFSGRHCEKCPTCSGRCQELKDCVQCQMYKTGELKNGDDCARNCTQFVPVGVEKVEIDE 734
            |  ..|.: |..|:|||||...|...|:||:|:.:|.|:|.:.|.|.|.|...:.:..:.|..| 
Zfish   616 T--QPGAY-GSTCDKCPTCPDACTLKKECVECKHFKRGKLFDDDSCTRICRDEIRLVDDLVFHD- 676

  Fly   735 TKDEQMCKFFDEDDCKFMFKYSE--QGELHVYAQENKECPAKVFMLGIVMGVIAAIVLVGLAILL 797
             |:...|.:.|||||...|:|.|  .|:..:...:..:||....:|.:::.|..||:.:|||.||
Zfish   677 -KNAVNCTYKDEDDCVQRFQYYEDNSGKSILSLVKEPDCPKGPDILVVLLSVAGAILFLGLAALL 740

  Fly   798 LWKLLTTIHDRREFARFEKERMNAKWDTGENPIYKQATSTFKNPMYAGK 846
            :||||.|||||||||:||:||..|||:||.||:||.|||||.|..|.||
Zfish   741 IWKLLITIHDRREFAKFEEERARAKWETGHNPLYKGATSTFTNITYRGK 789

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mysNP_001284997.1 INB 45..505 CDD:197563 175/471 (37%)
Integrin_B_tail 692..773 CDD:285239 26/82 (32%)
Integrin_b_cyt 803..843 CDD:285884 28/39 (72%)
itgb3bNP_001076417.1 Integrin_beta 37..463 CDD:278776 175/471 (37%)
Integrin_B_tail 635..718 CDD:285239 27/84 (32%)
Integrin_b_cyt 745..787 CDD:285884 29/41 (71%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1226
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48224
OrthoDB 1 1.010 - - D223415at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm25155
orthoMCL 1 0.900 - - OOG6_100678
Panther 1 1.100 - - O PTHR10082
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X739
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
109.830

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