DRSC/TRiP Functional Genomics Resources

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Protein Alignment rhi and cbx8b

DIOPT Version :9

Sequence 1:NP_536794.1 Gene:rhi / 44879 FlyBaseID:FBgn0004400 Length:418 Species:Drosophila melanogaster
Sequence 2:NP_001019586.1 Gene:cbx8b / 799361 ZFINID:ZDB-GENE-050522-325 Length:361 Species:Danio rerio


Alignment Length:325 Identity:68/325 - (20%)
Similarity:107/325 - (32%) Gaps:101/325 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 YVVEKILGKRFVNGRPQVLVKWSGFPNENNTWEPLENVGNCMKLVS----DFESEVFRLHR---- 80
            :..|.|:.:|...|..:.||||.|:..:.:||||.||:.:....|:    :.|.|:|...:    
Zfish    11 FAAESIIKRRIRRGHMEYLVKWKGWSPKYSTWEPEENILDPRLFVAFEEREREREIFGPKKRGPK 75

  Fly    81 ------KAAAKSVGKSKS--SPSSSGPLITENGPS------------------------------ 107
                  ||.||...||..  :.||.|..:|.:.|.                              
Zfish    76 LKTFLLKAQAKEKAKSYEFRNDSSRGIHVTYSSPEPVVAPRAREGLRAVVPTIFPPSTVNRGESV 140

  Fly   108 --SSKKTQQHSKSVQAKNTAGMSKMNQKKGKNIKKTAGKIKDIENYPKTQMPSTSQVSTDSTEVF 170
              .|.:.::|......:.|...|...:|:|:.     .|::..:.|.....|...:.:.|.|   
Zfish   141 RLQSPEPREHHSPHSPRPTDEFSLTPKKRGRK-----PKLRFTDGYTSNLHPEHVKRAADET--- 197

  Fly   171 DGNPSATTTNMIKSPRIQSLFSDLNLIEPTKDKDVGDTSLKTPPKSRRLIEFPQREDAPLSSK-- 233
                         ...|.|..:.|.|         |:...:.|..|.||....:..||..|.|  
Zfish   198 -------------MASIPSKMAKLGL---------GEDDERCPDISGRLKISHKDLDATCSHKQS 240

  Fly   234 ---------HVSPM-----------LIRKESQPLQSSCTDDSDLGESSSSMSLPTVSSTSSEKSI 278
                     |:||.           |:...:.| ||:......|...|...:|....|||.:.|:
Zfish   241 NVIPSRSTLHISPQWSLHSSRMEAGLLGHRTNP-QSNHFHQKHLKHYSKKRTLEHGDSTSRQPSL 304

  Fly   279  278
            Zfish   305  304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rhiNP_536794.1 CHROMO 22..72 CDD:237991 16/51 (31%)
ChSh 357..411 CDD:294039
cbx8bNP_001019586.1 Chromo 14..57 CDD:278797 16/42 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1628171at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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