DRSC/TRiP Functional Genomics Resources

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Protein Alignment rhi and cbx1

DIOPT Version :10

Sequence 1:NP_536794.1 Gene:rhi / 44879 FlyBaseID:FBgn0004400 Length:418 Species:Drosophila melanogaster
Sequence 2:NP_001017150.1 Gene:cbx1 / 549904 XenbaseID:XB-GENE-1005974 Length:184 Species:Xenopus tropicalis


Alignment Length:230 Identity:52/230 - (22%)
Similarity:87/230 - (37%) Gaps:73/230 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 NDHVEEYVVEKILGKRFVNGRPQVLVKWSGFPNENNTWEPLENVGNCMKLVSDFESEVFRLHRKA 82
            ::..|||||||:|.:|.|.|:.:.|:||.||.:::|||||.||: :|..|:::|           
 Frog    15 DEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDDDNTWEPEENL-DCPDLIAEF----------- 67

  Fly    83 AAKSVGKSKSSPSSSGPLITENGPSSSKKTQQHSKSVQAKNTAGMSKMNQKKGKNIKKTAGKIKD 147
                             |.::.....|:||:...:...:....|.....:||...::|..|..:.
 Frog    68 -----------------LQSQKSAYESEKTEAGKRKADSDTEVGEESKPKKKKDEVEKPRGFARG 115

  Fly   148 IENYPKTQMPSTSQVSTDSTEVFDGNPSATTTNMIKSPRIQSLFSDLNLIEPTKDKDVGD----- 207
            :|       |.....:|||:                        .:|..:...|:.|..|     
 Frog   116 LE-------PERIIGATDSS------------------------GELMFLMKWKNSDEADLVPAK 149

  Fly   208 -TSLKTPP-----KSRRLI--EFPQREDAPLSSKH 234
             .::|.|.     ...||.  .:|..||.....|:
 Frog   150 EANVKCPQVVISFYEERLTWHSYPSEEDDKKDEKN 184

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rhiNP_536794.1 CD_Rhino 23..73 CDD:349280 25/49 (51%)
CSD 362..411 CDD:349275
cbx1NP_001017150.1 CD_HP1beta_Cbx1 20..69 CDD:349297 25/77 (32%)
CSD_HP1beta_Cbx1 111..168 CDD:349301 13/87 (15%)
Blue background indicates that the domain is not in the aligned region.

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