DRSC/TRiP Functional Genomics Resources

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Protein Alignment rhi and Cbx7

DIOPT Version :10

Sequence 1:NP_536794.1 Gene:rhi / 44879 FlyBaseID:FBgn0004400 Length:418 Species:Drosophila melanogaster
Sequence 2:XP_006242082.1 Gene:Cbx7 / 362962 RGDID:735027 Length:251 Species:Rattus norvegicus


Alignment Length:237 Identity:43/237 - (18%)
Similarity:84/237 - (35%) Gaps:68/237 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 YVVEKILGKRFVNGRPQVLVKWSGFPNENNTWEPLENVGNCMKLVSDFESE-------------- 74
            :.||.|..||...|:.:.||||.|:|.:.:||||.|::.: .:||..:|.:              
  Rat    11 FAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILD-PRLVMAYEEKEEKDRASGYRKRGP 74

  Fly    75 ---------VFRLHRKAAAKSVGKSKSSPSSSGPL---------------ITENGP--------- 106
                     ::.:..:::.|:.||.|...|.:.||               :.|.||         
  Rat    75 KPKRLLLQRLYSMDLRSSHKAKGKEKLCFSLACPLGNGSPKGVVKAGAAELVEKGPLGPTLPFPL 139

  Fly   107 -----------SSSKKTQQHSKSVQAKNTAGMSKMNQKKGKNIKKTAGKIKDIENYPKTQM---- 156
                       .|.||.......:::.:......:.:....::.:..|..:.:|..|:.:.    
  Rat   140 RKPHKAHKYLRLSHKKFPPCGSHLESHSHRRELSLQESAAPDVLQATGDWEPVEQPPEEEAEADL 204

  Fly   157 -----PSTSQVSTDSTEVFDGNPSATTTNMIKSPRIQSLFSD 193
                 |.|..:.:....|.|...::.|....::...:..|.|
  Rat   205 TNGPPPWTPMLPSSEVTVTDITANSVTVTFREAQAAEGFFRD 246

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rhiNP_536794.1 CD_Rhino 23..73 CDD:349280 19/48 (40%)
CSD 362..411 CDD:349275
Cbx7XP_006242082.1 CD_Cbx7 7..62 CDD:349293 20/51 (39%)
CBX7_C 209..240 CDD:465385 5/30 (17%)
Blue background indicates that the domain is not in the aligned region.

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