DRSC/TRiP Functional Genomics Resources

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Protein Alignment rhi and Cbx3

DIOPT Version :10

Sequence 1:NP_536794.1 Gene:rhi / 44879 FlyBaseID:FBgn0004400 Length:418 Species:Drosophila melanogaster
Sequence 2:NP_031650.3 Gene:Cbx3 / 12417 MGIID:108515 Length:183 Species:Mus musculus


Alignment Length:98 Identity:39/98 - (39%)
Similarity:56/98 - (57%) Gaps:15/98 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 DAPPNDHVEEYVVEKILGKRFVNGRPQVLVKWSGFPNENNTWEPLENVGNCMKLVSDFESEVFRL 78
            :|.|    ||:||||:|.:|.|||:.:..:||.||.:.:|||||.||: :|.:|:     |.|..
Mouse    24 EAEP----EEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENL-DCPELI-----EAFLN 78

  Fly    79 HRKAAAKSVGKSKSSPSSSGPLITENGPSSSKK 111
            .:||..:..|..:.|.|.|     |:..|.|||
Mouse    79 SQKAGKEKDGTKRKSLSDS-----ESDDSKSKK 106

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rhiNP_536794.1 CD_Rhino 23..73 CDD:349280 23/49 (47%)
CSD 362..411 CDD:349275
Cbx3NP_031650.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..28 2/7 (29%)
CD_HP1gamma_Cbx3 29..78 CDD:349299 25/54 (46%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 78..125 11/34 (32%)
CSD_HP1gamma_Cbx3 116..173 CDD:349303
Blue background indicates that the domain is not in the aligned region.

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