DRSC/TRiP Functional Genomics Resources

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Protein Alignment sub and Kif13b

DIOPT Version :10

Sequence 1:NP_611260.1 Gene:sub / 44870 FlyBaseID:FBgn0003545 Length:628 Species:Drosophila melanogaster
Sequence 2:NP_001398965.1 Gene:Kif13b / 305967 RGDID:1303307 Length:1843 Species:Rattus norvegicus


Alignment Length:626 Identity:167/626 - (26%)
Similarity:257/626 - (41%) Gaps:188/626 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 QVFLRLRPVK----DASKAYIVSEEAN-VLITSCKVDSTSNNVNRMEKHFGFTSIF---DSTV-- 143
            :|.:|:||:.    |.....:|..||| |::.....:.:..:.....|.|.:...|   |.:|  
  Rat     7 KVAVRVRPMNRREIDLHTKCVVDVEANKVILNPINTNLSKGDARGQPKIFAYDHCFWSMDESVRE 71

  Fly   144 ---GQRDIYDTCVGPKIME------EECVTIMTYGTSGSGKTYTLLGDDVRAGIIPRALENIFTI 199
               ||.|:: .|:|..|::      ..|  |..||.:||||:||::|...:.|:|||        
  Rat    72 KYAGQDDVF-KCLGENILQNAFDGYNAC--IFAYGQTGSGKSYTMMGTADQPGLIPR-------- 125

  Fly   200 YQDTVFRSPKLKLINGSIVFLQDDASLKELQIRKKLLDLCPDISAHHQRLKQVIDGDHMFETKAS 264
                                                  ||..:....|:             :.:
  Rat   126 --------------------------------------LCSGLFERTQK-------------EEN 139

  Fly   265 TDVSVLVWVSFVEIYNELVYDLLAIPPKQDKLGEVPRKNLKIVGNKGH----VFIKGLTSVFVTS 325
            .:.|..|.||::|||||.|.|||      |..|.  |:.||:   :.|    .::.||:.:.|||
  Rat   140 EEQSFKVEVSYMEIYNEKVRDLL------DPKGS--RQTLKV---REHSVLGPYVDGLSKLAVTS 193

  Fly   326 SEEALRLLRLGQQRSTYASTSVNANSSRSHCVFTVDILK--YN-RSGITTQSSYK--FCDLAGSE 385
            .::...|:..|.:..|.|:|::|..|||||.||.:.:..  |: :||.:.:...|  ..||||||
  Rat   194 YKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLVDLAGSE 258

  Fly   386 RVNNTGTSGLRLKEAKNINTSLMVLGRCLDAASTVQKKKNAD-IIPYRDSKLTMLLQAALLGKEK 449
            |...||.:|.||||..|||.||..||..:.|.:.....||.: .:|||||.||.||:.:|.|..|
  Rat   259 RATKTGAAGDRLKEGSNINKSLTTLGLVISALADQGAGKNKNKFVPYRDSVLTWLLKDSLGGNSK 323

  Fly   450 LAMIVTVTPLDKYYEENLNVLNFASIAKNIIFKEPVIKQHRVSYCGFMEFSKMSTCEGGDYTKEL 514
            .||:.||:|....|:|.|:.|.:|..||:||       .|.|..                     
  Rat   324 TAMVATVSPAADNYDETLSTLRYADRAKHII-------NHAVVN--------------------- 360

  Fly   515 EDENVR----LQLEIEQLKYDHVLQMQLLE-----------EKLRRELTATY-------QEIIQN 557
            ||.|.|    |:.|:|:|: :.:.:.:.::           |||.:|:|.|:       :||.|.
  Rat   361 EDPNARIIRDLREEVEKLR-EQLTKAEAMKSPELKDRLEESEKLIQEMTVTWEEKLRKTEEIAQE 424

  Fly   558 NKKQYE---------------DEC--------------------EKKLLIAQRESEFMLSSQRRR 587
            .:||.|               |:|                    |..|:.:....:..|......
  Rat   425 RQKQLESLGISLQTSGIKVGDDKCFLVNLNADPALNELLVYYLKEHTLIGSANSQDIQLCGMGIL 489

  Fly   588 YEEQIEDLKDEIEELKNPASDTDISDDPNESKSPIEILDDD 628
            .|..|.|:..|.:.:..|..:|....:.:...|||::...|
  Rat   490 PEHGIIDIMPEGQVMLTPQKNTRTFVNGSSVSSPIQLHHGD 530

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
subNP_611260.1 KISc 89..477 CDD:276812 126/416 (30%)
GBP_C <512..603 CDD:293879 29/147 (20%)
coiled coil 576..586 CDD:293879 1/9 (11%)
coiled coil 592..603 CDD:293879 3/10 (30%)
Kif13bNP_001398965.1 KISc_KIF1A_KIF1B 4..360 CDD:276816 132/432 (31%)
Kinesin_assoc 357..469 CDD:465047 23/133 (17%)
FHA_KIF13B 447..545 CDD:438782 14/84 (17%)
COG4913 <614..>760 CDD:443941
KIF1B 756..802 CDD:463574
C2-C2_1 <888..>952 CDD:463310
bMERB_dom <1073..1143 CDD:463467
DUF3694 <1214..1277 CDD:463599
PHA03247 <1377..1715 CDD:223021
CAP_GLY 1720..1783 CDD:460154
Blue background indicates that the domain is not in the aligned region.

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