DRSC/TRiP Functional Genomics Resources

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Protein Alignment sub and Kif20a

DIOPT Version :9

Sequence 1:NP_001286548.1 Gene:sub / 44870 FlyBaseID:FBgn0003545 Length:628 Species:Drosophila melanogaster
Sequence 2:NP_001159878.1 Gene:Kif20a / 19348 MGIID:1201682 Length:887 Species:Mus musculus


Alignment Length:649 Identity:188/649 - (28%)
Similarity:289/649 - (44%) Gaps:137/649 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 QVFLRLRPV------KDASKAYIVSEEANVLITSCKVD-----STSNNVNRMEKHFGFTSIFDST 142
            :|:||:||.      :...:..:..|....|:.....|     |....|.:....|.|:.||...
Mouse    65 KVYLRIRPFLTSELDRQEDQGCVCIENTETLVLQAPKDSFALKSNERGVGQATHKFTFSQIFGPE 129

  Fly   143 VGQRDIYDTCVGPKIMEEECV-----TIMTYGTSGSGKTYTLLGDDVRAGIIPRALENIFTIYQD 202
            |||...::..:  |.|.::.:     .|.|||.:.||||||:.|....|||:|::|..||...|.
Mouse   130 VGQVAFFNLTM--KEMVKDVLKGQNWLIYTYGVTNSGKTYTIQGTSKDAGILPQSLALIFNSLQG 192

  Fly   203 TVFRSPKLK-LINGSIVFLQDDASLKELQIRKKLL--------DLCPDIS--------------- 243
            .:..:|.|| |::..:::| |...:::.:::|..|        :|...:.               
Mouse   193 QLHPTPDLKPLLSNEVIWL-DSKQIRQEEMKKLSLLIGGLQEEELSTSVKKRVHTESRIGASNSF 256

  Fly   244 ----AHHQRLKQVIDGDHMFET------------KASTDVSVLVWVSFVEIYNELVYDLLAIPPK 292
                |......|......:.||            ....|:...||:||.||||||:||||..|..
Mouse   257 DSGVAGLSSTSQFTSSSQLDETSQLWAQPDTVPVSVPADIRFSVWISFFEIYNELLYDLLEPPSH 321

  Fly   293 QDKLGEVPRKNLKIVGNK-GHVFIKGLTSVFVTSSEEALRLLRLGQQRSTYASTSVNANSSRSHC 356
            |.|     |:.|::..:: |:.::|.|..:.|...|||.:||::|::..::|||.:|..|||||.
Mouse   322 QHK-----RQTLRLCEDQNGNPYVKDLNWIHVRDVEEAWKLLKVGRKNQSFASTHMNQQSSRSHS 381

  Fly   357 VFTVDILKYNRSG--ITTQSSYKFCDLAGSERVNNTGTSGLRLKEAKNINTSLMVLGRCLDA-AS 418
            :|::.||.....|  :...|....||||||||..:. .||.|||||.||||||..||||:.| ..
Mouse   382 IFSIRILHLQGEGDIVPKISELSLCDLAGSERCKHQ-KSGERLKEAGNINTSLHTLGRCIAALRQ 445

  Fly   419 TVQKKKNADIIPYRDSKLTMLLQAALLGKEKLAMIVTVTPLDKYYEENLNVLNFASIAKNIIFKE 483
            ..|.:...::||:||||||.:.|....|:.:..|||.|.|....|:|.|:...|:::|..::...
Mouse   446 NQQNRSKQNLIPFRDSKLTRVFQGFFTGRGRSCMIVNVNPCASTYDETLHAAKFSALASQLVHAP 510

  Fly   484 PV----------IKQHRVSYCGFMEFSKMSTCEGGD----------YTKE-------------LE 515
            ||          ||:|.......:|....:..:..|          |.||             |:
Mouse   511 PVHLGIPSLHSFIKKHSPQVGPGLEKEDKADSDLEDSPEDEADVSVYGKEELLQVVEAMKALLLK 575

  Fly   516 DENVRLQLEI---EQLKYDHVLQMQ-------------------LLEEK---LRRELTATYQEII 555
            :...:|||||   |::..:.|.|||                   |.|||   |:..||..|||.|
Mouse   576 ERQEKLQLEIQLREEICNEMVEQMQQREQWCSERLDNQKELMEELYEEKLKILKESLTTFYQEQI 640

  Fly   556 QNNKKQYED-----ECEKKLLIAQRESEFMLSSQRRRY-----EEQIEDLKDEIEELKNPASDT 609
            |...::.|:     :..|:...||:.....|..:.:|.     .:|.:::|.|:|:.|...|.|
Mouse   641 QERDEKIEELETLLQEAKQQPAAQQSGGLSLLRRSQRLAASASTQQFQEVKAELEQCKTELSST 704

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
subNP_001286548.1 KISc 89..477 CDD:276812 141/447 (32%)
Kinesin 93..479 CDD:278646 140/445 (31%)
GBP_C <512..603 CDD:303769 35/138 (25%)
coiled coil 576..586 CDD:293879 1/9 (11%)
coiled coil 592..603 CDD:293879 3/10 (30%)
Kif20aNP_001159878.1 KISc_KIF23_like 62..504 CDD:276819 141/447 (32%)
Kinesin 69..505 CDD:278646 140/444 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 527..553 2/25 (8%)
GBP_C <536..651 CDD:303769 28/114 (25%)
coiled coil 620..631 CDD:293879 5/10 (50%)
coiled coil 640..651 CDD:293879 3/10 (30%)
Globular. /evidence=ECO:0000255 805..887
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 826..875
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0247
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S4904
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D314538at2759
OrthoFinder 1 1.000 - - FOG0006202
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_107198
Panther 1 1.100 - - O PTHR24115
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R641
SonicParanoid 1 1.000 - - X6226
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
109.800

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