DRSC/TRiP Functional Genomics Resources

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Protein Alignment sdt and lrguk

DIOPT Version :9

Sequence 1:NP_001033835.2 Gene:sdt / 44861 FlyBaseID:FBgn0261873 Length:2020 Species:Drosophila melanogaster
Sequence 2:XP_021330922.1 Gene:lrguk / 559670 ZFINID:ZDB-GENE-050419-232 Length:739 Species:Danio rerio


Alignment Length:245 Identity:70/245 - (28%)
Similarity:107/245 - (43%) Gaps:26/245 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly  1776 KKKKKASSEAGYPLYATTAPDE--------TDPEEIL--TYEEVALYYPRATHKRPIVLIGPPNI 1830
            ::|..|.::...||....|.|.        ..|:.|.  |...:...||.      :||.||...
Zfish   277 EEKVAAVNKYDPPLEVVAARDHMTHLVYQLMQPQVIFDSTLPSLDAPYPM------LVLTGPQAC 335

  Fly  1831 GRHELRQRLMAD-SERFSAAVPHTSRARREGEVPGVDYHFITRQAFEADILARRFVEHGEYEKAY 1894
            |:.||..:|..: |:.|:....||:|....||..|:||||:|.:.|...|...:|::..:|...:
Zfish   336 GKRELAHKLCQEFSDYFAYGACHTTRGPYFGEEDGLDYHFVTEEEFHNMIQMGQFIQTMQYGGHW 400

  Fly  1895 YGTSLEAIRTVVASGKICVLNLHPQSLKLLRASDLKPYVVLVAPPSLDK----LRQKKLRNGEPF 1955
            ||.|.|:|..|...|..|.:::..:.:..|:.|..:|..||:.|..:|.    |:.:...:....
Zfish   401 YGLSRESIERVAREGLACCVHMELEGVFSLKNSYFEPRYVLLIPSVVDNYVLFLKARGFYSNAQM 465

  Fly  1956 KEEELKDIIATARDMEARWGHLFDMIIINNDTERAYH---QLLAEINSLE 2002
             |..:..|...||....|.| .||.||..:|...||.   ||:.|...||
Zfish   466 -ETAVSRIDLYARINRERPG-FFDSIIPCDDRAEAYRSLKQLVKEYLGLE 513

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdtNP_001033835.2 PDZ_signaling <54..102 CDD:238492
L27 1423..1466 CDD:295425
PDZ_signaling 1562..1640 CDD:238492
SH3_MPP5 1673..1734 CDD:212969
Guanylate_kin 1820..1994 CDD:279019 54/181 (30%)
GuKc 1831..2002 CDD:214504 53/178 (30%)
lrgukXP_021330922.1 LRR <25..>247 CDD:227223
leucine-rich repeat 61..82 CDD:275380
leucine-rich repeat 83..104 CDD:275380
leucine-rich repeat 105..126 CDD:275380
leucine-rich repeat 127..148 CDD:275380
leucine-rich repeat 149..168 CDD:275380
leucine-rich repeat 170..191 CDD:275380
leucine-rich repeat 192..210 CDD:275380
leucine-rich repeat 211..238 CDD:275380
GMPK 326..449 CDD:238026 39/128 (30%)
Herpes_ICP4_C 520..>739 CDD:332854
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0194
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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