DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sdt and Card10

DIOPT Version :9

Sequence 1:NP_001033835.2 Gene:sdt / 44861 FlyBaseID:FBgn0261873 Length:2020 Species:Drosophila melanogaster
Sequence 2:XP_038935185.1 Gene:Card10 / 315120 RGDID:1304949 Length:1109 Species:Rattus norvegicus


Alignment Length:908 Identity:182/908 - (20%)
Similarity:318/908 - (35%) Gaps:257/908 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly  1212 PPPRDHLRVEKDG-------RLVNCSPAPQLPDRR--------APGNASSGSSGATTHPLQH--- 1258
            ||..:....|.||       |..|......|.:.:        .||  ::||.......|:|   
  Rat   307 PPGAEEKEKEPDGVDLLSELRAENQRLTASLQELQEGLQQEMSRPG--AAGSERILLDILEHDWR 369

  Fly  1259 ------QQIAQ---IVEPTLEQLDSIK-KYQEQLRRRREEEERIAQQNEFLRNSLRGSRKLKALQ 1313
                  |::.|   .|:..|:..:.:: ||.:::...|.:...:.:..:..::  |.:..|..|:
  Rat   370 EAQDSRQELCQKLHAVQGELQWAEELRDKYLQEMEDLRLKHRTLLKDCDLYKH--RMATVLAQLE 432

  Fly  1314 DTATPGKAVAQQQQQATLATQVVGVENEAYLPDEDQPQAEQIDGY----GELIAALTRLQNQLSK 1374
            :       :.:::.||..:...:.::....|.::|| ..:|:.|.    .||:..:|.|:.  :|
  Rat   433 E-------IEKERDQAIQSRDRIQLQYSQSLIEKDQ-YRKQVRGLEAERDELLTTVTSLEG--TK 487

  Fly  1375 SGLSTLAGRVSAAHSVLASASVAHVLAAR---TAVLQRRRSRVSGP-LHHSSLGLQKDIVELLTQ 1435
            :.|.....|.....|:.|.|| :|.|.:.   |..|....|.:.|| ....:.|.:....|..|.
  Rat   488 AMLEAQLQRTQGGSSLKACAS-SHSLCSNLSSTWSLSEFPSPLGGPEATGETGGSEPHTSEEATD 551

  Fly  1436 SNTAAAIELGNLLTSHEMEGLLLAHDR----------IANHTDGTPSPTPTP-TPAIGAATGSTL 1489
            |.  ..|...::|......|.:|...|          .::.:|.|.|.|..| :|.:.:::.|..
  Rat   552 SE--KEINRLSILPFPPSAGSILRRQREEDPEPPKRSFSSMSDITGSVTLKPWSPGLSSSSSSDS 614

  Fly  1490 SSPVAGPK----RNLGMVVPPPVVPPPLAQRGAMPLPRGESPPPVPMPPLAT---------MPMS 1541
            ..|:..|:    |..|:......:   |....|:..|...|.|..|....|:         :.:|
  Rat   615 VWPLGKPEGLLARGCGLDFLNSSI---LRWDPAVSSPEASSEPLCPSLAAASRLEANGCSLLELS 676

  Fly  1542 MPVNLPMSACFGTLNDQNDNIRIIQIEKSTEPL--------GATVRNEGEAVVIGRIVRGGA--- 1595
            :.:.:...:..|.|:.|         :||.:.|        ||.||         |::.|..   
  Rat   677 LAIRVSGWSPSGGLDPQ---------DKSPDSLPILGDRWSGAVVR---------RVLSGPGSAR 723

  Fly  1596 -------AEKSGLLHEGDEILEVNGQELRGKTV--NEVCALLGAMQGTLTFLIVPAGSP---PSV 1648
                   ||.|||...|.|      .|::.:|:  |:        ..||.||:......   .::
  Rat   724 TEQKEPRAEGSGLEGTGLE------AEVQQRTLPWNQ--------SSTLPFLLDSKACQSFHEAL 774

  Fly  1649 GVMGGTTGSQLAGLGGAHRDTAVLHVRAHFDYDPEDDLYIPCRELGISFQKGDVLHVISREDPNW 1713
            .|.....|::            ..::||:|......|.:..|      .:..::|.::   ||  
  Rat   775 DVWAKGPGAE------------PFYIRANFSLPERADPHALC------VKAQEILRLV---DP-- 816

  Fly  1714 WQAYREGEE-----DQTLA------GLIPSQSFQHQRETMKLAIAEEAGLARSRGKDGSGSKGAT 1767
              ||:..:|     ..||.      |.:|:    :||....|.:.|:..::.......|..|...
  Rat   817 --AYKRRQEWFCTRVDTLTLRDLDRGTVPN----YQRAQQLLEVQEKYLISSRHRSPRSNLKKRA 875

  Fly  1768 LLCARKGRKKKKKASSEAGYPLYATTAPDETDPEEILTYEEVALYYP-RATHKRPIVLIGPPNIG 1831
            |     |..:.|.|...||..  |...|.:...|...:.:..:|..| ..:..||:||: |..:.
  Rat   876 L-----GLVRPKPAGGTAGDS--AEQLPADPCSELERSLKPYSLVRPLLVSALRPVVLL-PECLA 932

  Fly  1832 RHELRQRLMADSERFSAAVPHTSRARREGE------VPGVDYHFITRQAFEADILARRFVEHGEY 1890
            ...:|..|...|.|....|  .|.....||      .||..      :|:.|             
  Rat   933 PRLIRNLLDLPSSRLDFQV--CSAESLSGEEQCTSSAPGAP------KAWPA------------- 976

  Fly  1891 EKAYYGTSLEAIRTVVASGKICVLNLHPQSLKLLRASDLKPYVVLVAPPSLDKLRQKKLRNGEPF 1955
             .|..|:.:.||:..|.. |.|:|.|..:.::.|..|::.|.|:.|      ::.:|.:|     
  Rat   977 -SAGLGSRIRAIQESVGK-KHCLLELGARGVRELVHSEVYPIVIHV------EVTEKNVR----- 1028

  Fly  1956 KEEELKDIIATA--RDMEARWGHLFDMIIINNDTERAYHQLLAEINSLEREPQW---VPAQWV 2013
               |::.::...  ||.|                      ||.:....|   ||   :|..||
  Rat  1029 ---EIRSLLGRPGWRDSE----------------------LLRQCRGSE---QWLWGLPCSWV 1063

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdtNP_001033835.2 PDZ_signaling <54..102 CDD:238492
L27 1423..1466 CDD:295425 9/52 (17%)
PDZ_signaling 1562..1640 CDD:238492 23/97 (24%)
SH3_MPP5 1673..1734 CDD:212969 15/71 (21%)
Guanylate_kin 1820..1994 CDD:279019 37/181 (20%)
GuKc 1831..2002 CDD:214504 34/178 (19%)
Card10XP_038935185.1 CARD_CARD10_CARMA3 76..161 CDD:260069
Smc <196..>499 CDD:224117 38/205 (19%)
SH3 784..849 CDD:418401 17/93 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0194
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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