DRSC/TRiP Functional Genomics Resources

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Protein Alignment sdt and pals1a

DIOPT Version :9

Sequence 1:NP_001033835.2 Gene:sdt / 44861 FlyBaseID:FBgn0261873 Length:2020 Species:Drosophila melanogaster
Sequence 2:NP_919344.1 Gene:pals1a / 252845 ZFINID:ZDB-GENE-020712-1 Length:703 Species:Danio rerio


Alignment Length:796 Identity:307/796 - (38%)
Similarity:431/796 - (54%) Gaps:192/796 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly  1250 GATTHPLQHQQIAQIVEPTLEQLDSIKKYQEQLRRRREEEERIAQQNEFLRNSLRGSRKLKALQD 1314
            ||.|.|::..          .||:.|::.||. |||||||.|..|:.:     |..|.:||.|..
Zfish    67 GARTLPVRRS----------AQLEKIRQQQED-RRRREEEGRSRQELD-----LNSSMRLKKLSQ 115

  Fly  1315 TATPGKAVAQQQQQATLATQVVGVENEAYLPDEDQPQAEQIDGYG-------------------E 1360
            ...                  ||::|         |..||::|.|                   :
Zfish   116 NPK------------------VGIDN---------PTFEQMEGPGGSAGGLQSLIAPPALLELED 153

  Fly  1361 LIAALTRLQNQLSKSG-------LSTLAGRVSAAHSVLASASVAHVLAARTAVLQRRRSRVSGPL 1418
            |:.:|.::|:.|:.|.       :..|..:.....:.....||||.:         .|.....||
Zfish   154 LLMSLKQVQHSLNDSQSQEDVELVLQLVQKPDFQKAFSIHNSVAHYM---------NRPSPPYPL 209

  Fly  1419 HHSSLGLQKDIVELLTQSNTAAAIELGNLLTSHEMEGLLLAHDRIANHTDGTPSPTPTPTPAIGA 1483
            ...:..|.:::..::..|:....:||.:||::..|:.|::|||.:|..                 
Zfish   210 TDHAQTLAQEVEVMVQNSSHKEGLELSSLLSTSHMQALMMAHDSVAEQ----------------- 257

  Fly  1484 ATGSTLSSPVAGPKRNLGMVVPPPVVPPPLAQRGAMPLPRGESPPPVPMPPLATMPMSMPVNLPM 1548
                         :..|..:||.......|.|.|      ||:                      
Zfish   258 -------------EMQLEPLVPSVNASETLTQWG------GET---------------------- 281

  Fly  1549 SACFGTLNDQNDNIRIIQIEKSTE-PLGATVRNEGEAVVIGRIVRGGAAEKSGLLHEGDEILEVN 1612
                         ::|::|||:.: ||||||||:.::|||.|||:|||||:||||||||||||:|
Zfish   282 -------------VKIVRIEKAKDIPLGATVRNDMDSVVISRIVKGGAAERSGLLHEGDEILEIN 333

  Fly  1613 GQELRGKTVNEVCALLGAMQGTLTFLIVPAG---SPPSVGVMGGTTGSQLAGLGGAHRDTAVLHV 1674
            |.|:|||.||||..:|..|.|.|:|:::|:.   |||.                   ::| |:||
Zfish   334 GVEIRGKDVNEVFDILADMHGVLSFVLIPSAQIKSPPI-------------------KET-VVHV 378

  Fly  1675 RAHFDYDPEDDLYIPCRELGISFQKGDVLHVISREDPNWWQAYREGEED-QTLAGLIPSQSFQHQ 1738
            :|||||||.||.|:||||||:.|||||:||:||::|||||||||:|:|| |.||||:|.:|||.|
Zfish   379 KAHFDYDPSDDPYVPCRELGLCFQKGDILHIISQDDPNWWQAYRDGDEDNQPLAGLVPGKSFQQQ 443

  Fly  1739 RETMKLAIAEEAGLARSRGKDGSGSKGATLLCARKGRKKKKKASSEAGYPLYATTAPDETDPEEI 1803
            ||.||..|.|          |....|...|.||:|.:||:||..       |.....|:.|.|||
Zfish   444 REAMKQTIEE----------DKEPEKTGKLWCAKKTKKKRKKMQ-------YNANKNDDFDNEEI 491

  Fly  1804 LTYEEVALYYPRATHKRPIVLIGPPNIGRHELRQRLMA-DSERFSAAVPHTSRARREGEVPGVDY 1867
            |||||:|||:..|..||||.||||||.|::||||||:: :.:||:..||||:|:||:.|..|.||
Zfish   492 LTYEEMALYHQPANRKRPIALIGPPNCGQNELRQRLLSTEPDRFAGPVPHTTRSRRDAEANGRDY 556

  Fly  1868 HFITRQAFEADILARRFVEHGEYEKAYYGTSLEAIRTVVASGKICVLNLHPQSLKLLRASDLKPY 1932
            ||::|||||.|..|.:|:|.||:||.:||||.:::|.|:.:||||:|.:|.||||:||:||||||
Zfish   557 HFVSRQAFEMDSAAGKFIESGEFEKNFYGTSTDSVRQVINTGKICLLCVHTQSLKVLRSSDLKPY 621

  Fly  1933 VVLVAPPSLDKLRQKKLRNGEPFKEEELKDIIATARDMEARWGHLFDMIIINNDTERAYHQLLAE 1997
            ::.:||||.::||....::.:..|.|||:|||..||:||..:|||||..|:|.|.:::|.:||..
Zfish   622 IIFIAPPSQERLRALLAKDNKNPKPEELRDIIEKAREMEQNYGHLFDAAIVNTDLDKSYQELLRL 686

  Fly  1998 INSLEREPQWVPAQWV 2013
            ||.|:.||||||:.|:
Zfish   687 INKLDTEPQWVPSSWL 702

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdtNP_001033835.2 PDZ_signaling <54..102 CDD:238492
L27 1423..1466 CDD:295425 12/42 (29%)
PDZ_signaling 1562..1640 CDD:238492 50/78 (64%)
SH3_MPP5 1673..1734 CDD:212969 45/61 (74%)
Guanylate_kin 1820..1994 CDD:279019 94/174 (54%)
GuKc 1831..2002 CDD:214504 89/171 (52%)
pals1aNP_919344.1 L27_N 150..197 CDD:286189 7/46 (15%)
PDZ_signaling 282..361 CDD:238492 50/78 (64%)
SH3_MPP5 377..439 CDD:212969 45/61 (74%)
Guanylate_kin 506..690 CDD:279019 99/183 (54%)
GuKc 519..689 CDD:214504 88/169 (52%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170585850
Domainoid 1 1.000 210 1.000 Domainoid score I2764
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H9512
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D245552at33208
OrthoFinder 1 1.000 - - FOG0000824
OrthoInspector 1 1.000 - - otm26191
orthoMCL 1 0.900 - - OOG6_107065
Panther 1 1.100 - - LDO PTHR23122
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3662
SonicParanoid 1 1.000 - - X4595
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1211.840

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