DRSC/TRiP Functional Genomics Resources

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Protein Alignment sdt and magu-3

DIOPT Version :9

Sequence 1:NP_001033835.2 Gene:sdt / 44861 FlyBaseID:FBgn0261873 Length:2020 Species:Drosophila melanogaster
Sequence 2:NP_491260.2 Gene:magu-3 / 183676 WormBaseID:WBGene00016841 Length:479 Species:Caenorhabditis elegans


Alignment Length:496 Identity:120/496 - (24%)
Similarity:190/496 - (38%) Gaps:145/496 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly  1543 PVNLPMSACFGTLNDQNDNIRII----------QIEKSTEPLG----ATVRNEGEAVVIGRIVRG 1593
            |...|:....||   :|.|...|          |..|:|...|    ..|...|..:|:.:|   
 Worm   103 PTMTPILRSSGT---KNHNYAPIHQSAILLPQYQSRKTTVDAGQLTQVEVEKHGGQLVVTKI--- 161

  Fly  1594 GAAEKSGL-LHEGDEILEVNGQEL--RGKTVNEVCALLGAMQGTLTFLIVPAGSPPSVGVMGGTT 1655
              .|||.. |..||.|.:|:|:::  |....|        ::|.:...:.||             
 Worm   162 --NEKSNYDLKPGDVITQVDGKDVYFRADIEN--------LKGKVELTVEPA------------- 203

  Fly  1656 GSQLAGLGGAHRDTAVLHVRAHFDYDPEDDLYIPCRELGISFQKGDVLHVISREDPNWWQAYREG 1720
                    |.|...|..| |....|....|:..||..|.:....|||:.::|: |..|.|..:.|
 Worm   204 --------GIHCAPANFH-RVQDTYSSHIDVDRPCLWLDLEVNPGDVIQILSK-DEKWMQVRKLG 258

  Fly  1721 EEDQTLAGLIPSQSFQHQRETMKLAIAEEAGLARSRGKDGSGSKGATLLCARKGRKKKKKASSEA 1785
              |.|..|.:|:.                                                    
 Worm   259 --DLTQVGYLPTS---------------------------------------------------- 269

  Fly  1786 GYPLYATTAPDETDPEEILTYEEVALYYPRATHKRPIVLIGPPNIGRHELRQRLMADSER-FSAA 1849
                              ||.|:|::..|..  :|.:||:|....||.:::..|:..:.. ||..
 Worm   270 ------------------LTMEKVSMLCPFG--RRTLVLLGAVGTGRRDIKSMLLRLAPHYFSTI 314

  Fly  1850 VPHTSRARREGEVPGVDYHFITRQAFEADILARRFVEHGEYEKAYYGTSLEAIRTVVASGKICVL 1914
            ||.||||:|.|||.|.:|.|:.::.....|.....||.||.:...||||.:::|..:.||::|||
 Worm   315 VPLTSRAQRPGEVEGREYQFVRKEEIYQKIREGGMVEWGELDSQLYGTSADSVRNEIRSGRMCVL 379

  Fly  1915 NLHPQSLKLLRASDLKPYVVLVAPPSLDKLRQKKLRNGEPFKEEELKDIIATARDMEARWG---- 1975
            :..|||:..|..::..|:||.|.||.:::..|.:........:.:|:.|.    |..|:.|    
 Worm   380 DAAPQSVNYLYNAEFMPFVVHVVPPPIEEFTQLEAVRRTHRTQGQLQSIC----DESAKIGLECK 440

  Fly  1976 ---HLFDMIIINNDTERAYHQLLAEINSLEREPQWVPAQWV 2013
               ||   .::|.:.:..:.:|:..:.:|..|.||||..|:
 Worm   441 SKIHL---TLVNRNIDVTFKRLVDSLETLRYETQWVPHSWM 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdtNP_001033835.2 PDZ_signaling <54..102 CDD:238492
L27 1423..1466 CDD:295425
PDZ_signaling 1562..1640 CDD:238492 21/94 (22%)
SH3_MPP5 1673..1734 CDD:212969 19/60 (32%)
Guanylate_kin 1820..1994 CDD:279019 56/181 (31%)
GuKc 1831..2002 CDD:214504 53/178 (30%)
magu-3NP_491260.2 PDZ 147..204 CDD:381812 18/90 (20%)
SH3 218..268 CDD:388381 16/52 (31%)
Guanylate_kin 282..464 CDD:366206 57/190 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0194
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000824
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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