DRSC/TRiP Functional Genomics Resources

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Protein Alignment sdt and Patj

DIOPT Version :9

Sequence 1:NP_001033835.2 Gene:sdt / 44861 FlyBaseID:FBgn0261873 Length:2020 Species:Drosophila melanogaster
Sequence 2:XP_038965114.1 Gene:Patj / 140581 RGDID:1565362 Length:1858 Species:Rattus norvegicus


Alignment Length:1863 Identity:341/1863 - (18%)
Similarity:554/1863 - (29%) Gaps:693/1863 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   601 QQQQQQQQHQLLSAAYELQQ----QQQLQLQQQQQQQNSPTSSI--------SIGRTELLL-GDQ 652
            |::....|::.|||.||..:    .|.|.|||..:|.....|.|        ...|..||: .|.
  Rat    24 QEKGDTTQNEKLSAFYETLKSPLFNQILTLQQSIKQLKGQLSHIPSDCSANFDFSRKGLLVFTDG 88

  Fly   653 SLRQDPRGNRRRSGSSIVVLDGDDLKPCLPDDYISGQHHLNHQQQLQLQQQLQQQH--------- 708
            |:   ..||..|..|||...:.      ||....||    |......:||..|.:|         
  Rat    89 SI---TNGNAHRPCSSITASES------LPWTQRSG----NEDFTSVIQQMAQGRHIEYIDIERP 140

  Fly   709 ----------PLQQQHY--------RTHSGDIREIDQEMLTMLSVNQDNGPHREMAVDCPDTFIA 755
                      .|:.|..        ..|.|.:.:.||.:       ::|           |..:|
  Rat   141 STGGLGFSVVALRSQSLGLIDIFVKEVHPGSVADRDQRL-------KEN-----------DQILA 187

  Fly   756 RNKTPPRYPPPRPPQKHKKSTNTTTTTTITALTNNDHANKMLIVAYHSSHQHEQLQQQHPSKTST 820
            .|.||             ...|.:....| ||......:..|:||....|      .|..:.||:
  Rat   188 INDTP-------------LDQNISHQQAI-ALLQQATGSLRLVVAREVGH------TQSRTSTSS 232

  Fly   821 TTTTI-----------------------------ALDVATQNLYNQKQQNKLEQIENYENCLQ-S 855
            ..||:                             :..|..:.:......::..:::..::.|: .
  Rat   233 ADTTLPETVRWGHTEDVELINDGSGLGFGIVGGKSSGVVVRTIVPGGLADRDGRLQTGDHILKIG 297

  Fly   856 ERNEQHEQQFEQQKQHQATTAMAATQVAQ-QQTPSHKLQATLSSDPNGN------SNSNNNSHIV 913
            ..|.|               .|.:.|||| .:...:.::..::.||.|.      :.::....:.
  Rat   298 STNVQ---------------GMTSEQVAQVLRNCGNSVRMLVARDPVGEIAVTPPTPASLPVALP 347

  Fly   914 GISSSSSSNNSSITDDF---LCVVDGLYQGRK-----DTASPSSSAFDEVMSKHTLDSFGSIAYR 970
            .:::.:..::||..:.:   |...||...|.:     .||.|..::  .:..|..:.  ||.||.
  Rat   348 VVATRTLGSDSSPFETYNVELVKKDGQSLGIRIVGYVGTAHPGEAS--GIYVKSIIP--GSAAYH 408

  Fly   971 HLHQQHQATSNGNSSSNTS-------NTNSNTNSNTNSNSNTNGNTSNNTAVSTKTATVTKTGVS 1028
                      ||....|..       |.....|.:........|...:.|.|..||         
  Rat   409 ----------NGQIQVNDKIVAVDGVNIQGFANQDVVEVLRNAGQVVHLTLVRRKT--------- 454

  Fly  1029 SSNSNSNSLNSSNSSMHTSSSSSGHSSNIASATSSSSATSSSTV--------------------- 1072
                   ||::|.....:|..:......:...|.|....::|.:                     
  Rat   455 -------SLSASPFEQPSSREAVAEPPEVPELTGSLKPETNSRMEAEEIGERLDNLRKDTVQALE 512

  Fly  1073 -----PDDL-------------SLAPPGYEV----------SQQQQQQHLVATPVTML-----LP 1104
                 |:|:             :|..|.|||          ..::.|::....|:..|     :.
  Rat   513 KPDVYPEDIPGCPENELKSRWENLLGPDYEVMVATLDTQIADDEELQKYSKLLPIHTLRLGMEVD 577

  Fly  1105 PMAKHREL-------PVDV------PDSFIEM-------------VKTTPRYPPPAHLSSRGSLL 1143
            ....|..:       |||.      .|..:|:             |......|||..|.....|.
  Rat   578 SFDGHHYISSIAPGGPVDTLNLLQPEDELLEVNGVQLYGKSRREAVSFLKEVPPPFTLVCCRRLF 642

  Fly  1144 SNGSASTAHTTLSSMGVAPSPVTATAAAAASASA-------ACATTAVAAAAV------------ 1189
            .:.::.....|     |.||.:.|....:...|.       |..:..|....:            
  Rat   643 DDEASVDEPRT-----VEPSLLEAEVDRSVDVSTEDDDGELALWSPEVKTVELVKDCKGLGFSIL 702

  Fly  1190 ----------------SGVADGDARRVADELNG------------NA---------KPVPPPRDH 1217
                            |.||||.|.|..:.|.|            ||         |.|||...|
  Rat   703 DYQDPLDPMRSVIVIRSLVADGVAERSGELLPGDRLVSVNEFSLDNATLAEAVEVLKAVPPGVVH 767

  Fly  1218 LRVEKDGRLVNCSPAPQLPDR--------RAPGNASSGSSGATTHPLQHQQIAQIV-----EPTL 1269
            |.:        |.|..:....        .:..|..:..|..|.|.:....|.:..     ||.|
  Rat   768 LGI--------CKPLVEEEKEEKEEHFIFHSNNNGDNSESPETVHEIHSSLILEAPQGFRDEPYL 824

  Fly  1270 EQL-------------------DSIKKYQE-------QLRRRREEEERIAQQN------------ 1296
            |:|                   ||..:..|       :|.||.||.|.:..:.            
  Rat   825 EELVDEPFLDLGKSLQFQQKDMDSSSEAWEMHEFLSPRLERRGEEREMLVDEEYEIYQDRLRDME 889

  Fly  1297 ------------------------EFLRNSLRGSRKLKALQDTATPGKAVAQQQQQATLAT---- 1333
                                    ::|...|.|...|:. .||.:...|..|:.|..:.:|    
  Rat   890 AHPPPPHIREPTSASPRLDLQAGPQWLHADLSGGEILEC-HDTESMMTAYPQEMQDYSFSTTDMM 953

  Fly  1334 -QVVGVENEAYLP-DEDQPQAEQIDGYGELIAALTRLQNQLSKSGL-------STLAG------- 1382
             :..|:::...:| .|...|..:.|....|        :.|...||       |.|.|       
  Rat   954 KETFGLDSRPPMPSSEGNGQHGRFDDLEHL--------HSLVSHGLDLGMMTPSDLQGPGVLVDL 1010

  Fly  1383 ---------------RVSAAHSVLASASVAHVLAARTA-----VLQRRRSRVSGPLHHSSLGLQK 1427
                           |:.:|..|...:|...::::|.|     :.:|.........:.|..|..:
  Rat  1011 PAVTQRREQEELPLYRLPSARVVTKPSSHVGMVSSRHANAACELPEREEGEGEETPNFSHWGPPR 1075

  Fly  1428 DIVELLTQSNTAAAIE-------LGNLLTSHEMEGLLLAH----------------DRI------ 1463
             |||:..:.|.:..|.       :..|....|::|:.:..                |:|      
  Rat  1076 -IVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTKALKTGDKILEVSGV 1139

  Fly  1464 ----ANHTDGTPSPTPTPTPAIGAATGSTLSSPVAGPKRNLGMVVPPPVVPPPLAQRGAMPLPRG 1524
                |:|.:...:......|.: ....|..|:|...|..|.....||........::.|.  ..|
  Rat  1140 DLQNASHAEAVEAIKSAGNPVV-FVVQSLSSTPRVIPSVNNKGKTPPQNQDQNTQEKKAK--RHG 1201

  Fly  1525 ESPPPVPMPPLATMPMSMPVNLPMSACFGTLNDQNDN-----------------IRIIQIEKSTE 1572
            .:|||:.:||        |...|.:   .|...:.|:                 :.||::||...
  Rat  1202 TAPPPMKLPP--------PYRAPSA---DTEESEEDSALTDKKIRQRYADLPGELHIIELEKDKN 1255

  Fly  1573 PLGATV-----RNEGEAVVIGRIVRGGAAEKSGLLHEGDEILEVNGQELRGKTVNEVCALL--GA 1630
            .||.::     |:.....|:| |...|.|...|.:..|||:||:|.|.|.|::.....|::  ..
  Rat  1256 GLGLSLAGNKDRSRMSIFVVG-INPDGPAAADGRMRVGDELLEINNQILYGRSHQNASAIIKTAP 1319

  Fly  1631 MQGTLTFL--------------IVPAGSPPSVGVMGGTTGSQLAGLGGAHRDTAVLHVRAHFDYD 1681
            .:..|.|:              .||:.||..|..:|||...      .:..|::|       |..
  Rat  1320 TRVKLVFIRNEDAVNQMAVAPFPVPSHSPSPVEDLGGTEPV------SSEEDSSV-------DAK 1371

  Fly  1682 PEDDLYIPCRELGISFQKGDVLHVI----------SREDPNWWQAYREGEEDQTLAGLIPSQSFQ 1736
            |     :|.||   |.:..|:...:          :.|.|:  .|.|:.::        |..|.|
  Rat  1372 P-----LPERE---SSKPEDLTQAVDDSMVAEQEKASESPD--SAARQMKQ--------PGYSAQ 1418

  Fly  1737 HQRETMKLAIAEEAGLARSRGKD--GSGSKGATLLCARKGRKKKKKASSEAGYPLYATTAPDETD 1799
            ....:.::..| .|.|.:|...|  |||:..|                     ||....||...|
  Rat  1419 VSSSSQEIPSA-PAPLCQSTHADVTGSGNFQA---------------------PLSVDPAPLSVD 1461

  Fly  1800 PE--EILTYEEVALYYPRATHKRPIVLIG-----------PPNIGRHELR-QRLMADSERFSAAV 1850
            |.  .|:..:|:.:...:......:.::|           |..:|..|.: |.:|:........|
  Rat  1462 PATCPIVPGQEMIIEISKGRSGLGLSIVGGKDTPLPGGSLPTKVGVWEKKLQEMMSQDAIVIHEV 1526

  Fly  1851 PHTSRARREG---------EVPGVDYHFITRQAFEADILARRFVEHGEYEKAYYGTSLEAIRTVV 1906
            .....|.|:|         ||.|||                  :....:|:|             
  Rat  1527 YEEGAAARDGRLWAGDQILEVNGVD------------------LRSSSHEEA------------- 1560

  Fly  1907 ASGKICVLNLHPQSLKLLRASDLKPY-------VVLVAPPSLDKLRQKKL-------RNGEPFKE 1957
                |..|...||.::|:...|...|       |.||   .|.|...:.|       |:|...  
  Rat  1561 ----ITALRQTPQKVRLVIYRDEAQYRDEENLEVFLV---DLQKKTGRGLGLSIVGKRSGSGV-- 1616

  Fly  1958 EELKDII-ATARDMEARWGHLFDMIIIN-NDTERAYHQLLAEI 1998
             .:.||: ..|.|::.|......::.:| .|..:|..:.:|.|
  Rat  1617 -FISDIVKGGAADLDGRLIRGDQILSVNGEDVRQASQETVATI 1658

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdtNP_001033835.2 PDZ_signaling <54..102 CDD:238492
L27 1423..1466 CDD:295425 12/75 (16%)
PDZ_signaling 1562..1640 CDD:238492 25/98 (26%)
SH3_MPP5 1673..1734 CDD:212969 12/70 (17%)
Guanylate_kin 1820..1994 CDD:279019 40/210 (19%)
GuKc 1831..2002 CDD:214504 40/194 (21%)
PatjXP_038965114.1 L27_2 8..65 CDD:312549 13/40 (33%)
PDZ_signaling 135..218 CDD:238492 17/114 (15%)
PDZ_signaling 248..325 CDD:238492 9/91 (10%)
PDZ_signaling 366..450 CDD:238492 19/97 (20%)
CtpA <391..>511 CDD:223864 22/149 (15%)
PDZ_signaling 572..636 CDD:238492 10/63 (16%)
PDZ 684..773 CDD:214570 19/96 (20%)
PDZ_signaling 1074..1165 CDD:238492 13/92 (14%)
PDZ 1244..1329 CDD:214570 25/85 (29%)
PDZ 1471..1578 CDD:214570 23/141 (16%)
PDZ_signaling 1590..1670 CDD:238492 18/75 (24%)
PDZ_signaling 1731..1816 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0194
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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