DRSC/TRiP Functional Genomics Resources

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Protein Alignment ru and KOM

DIOPT Version :9

Sequence 1:NP_524790.1 Gene:ru / 44856 FlyBaseID:FBgn0003295 Length:341 Species:Drosophila melanogaster
Sequence 2:NP_001321009.1 Gene:KOM / 844122 AraportID:AT1G77860 Length:385 Species:Arabidopsis thaliana


Alignment Length:316 Identity:65/316 - (20%)
Similarity:117/316 - (37%) Gaps:93/316 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 TKSNSPD--WG-----NHRAKHHEGSAAPFKWIPPFFIIL-----------------------AT 105
            |.||:.|  |.     .||::..:...    |:...|::|                       |.
plant    22 TTSNAGDSSWDKISFFRHRSRQIKRDT----WLVSVFVLLQIVLFAVTMGVNDCSGNSHGHCSAK 82

  Fly   106 LLEVLVFLWVGADP---PEDSLLVYRP-------DQRLQLWRFLSYALLHASWLHLGYNVLTQLL 160
            ||....|..:..:|   |..|.|.:..       .:..::||.|:...||:...||..|:.:.:.
plant    83 LLGRFSFQSLSENPMLGPSASTLEHMGGLSWKALTENHEIWRILTSPWLHSGLFHLFINLGSLIF 147

  Fly   161 FGVPLELVHGSLRTGVIYMAGVLAGSLGTSVVDSEVFLVGASGGVYALLAAQLASLLLNFGQMRH 225
            .|:.:|...|.||..|||....:.|||...:....:..:.:....:.|:.|.|::|..|: .:.:
plant   148 VGIYMEQQFGPLRIAVIYFLSGIMGSLFAVLFVRNIPSISSGAAFFGLIGAMLSALAKNW-NLYN 211

  Fly   226 GVIQLMAVILFVFCD---LGYALYSRELAMHQLQTRPSVSYIAHMTGALAGISVGLLL-----LR 282
            ..|..:|:|..:|..   :|:.              |.:...|::.|.::|..:|.:|     ||
plant   212 SKISALAIIFTIFTVNFLIGFL--------------PFIDNFANIGGFISGFLLGFVLLFKPQLR 262

  Fly   283 QLDGGLR------------------PRP-LRWLALGVWC-------IFSAFGIAFN 312
            |:....:                  .|| ||.:.|.|:|       :.:.:|:..|
plant   263 QMPPSHKGKLFEDDMNRSTRLKEQFDRPVLRIICLLVFCGILAGVLLAACWGVNLN 318

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ruNP_524790.1 Rhomboid 129..282 CDD:279958 35/167 (21%)
KOMNP_001321009.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 84 1.000 Domainoid score I2842
eggNOG 1 0.900 - - E1_COG0705
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1253228at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm1037
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X418
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
76.780

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