DRSC/TRiP Functional Genomics Resources

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Protein Alignment ru and rho-4

DIOPT Version :9

Sequence 1:NP_524790.1 Gene:ru / 44856 FlyBaseID:FBgn0003295 Length:341 Species:Drosophila melanogaster
Sequence 2:NP_525084.1 Gene:rho-4 / 32109 FlyBaseID:FBgn0030318 Length:417 Species:Drosophila melanogaster


Alignment Length:390 Identity:110/390 - (28%)
Similarity:179/390 - (45%) Gaps:103/390 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 PSQGRRPKNRPLI---GTVEEGEMPPSTVLQMPPAPL-----------SSKSGLVL--------- 49
            |::.|.|.:||..   .|::..|:|.:......|...           |.:.||:.         
  Fly    35 PAERRSPPSRPQTLRQDTIDMEEIPLNQTNSQEPEDRRKMHEIFDKHDSDRDGLINTHELKELIS 99

  Fly    50 -GVC-------CDQLM-------------------------------------AVQPVQRASGAA 69
             |.|       .||::                                     .|.|.:...|  
  Fly   100 DGYCRDIPAYIADQILKRSDQDNDGHLDFEEFYAMSLRHKWMVRNMLTRYCRYVVPPPKPLEG-- 162

  Fly    70 ATKSNSPDWGNHRAKHHEGSAAPFKWIPPFFIILATLLEVLVFL----WVGADP----------- 119
                :.||    .|...:.|..|    ||..::|.:::|:::||    ....||           
  Fly   163 ----DEPD----GAYEKQMSICP----PPLTMVLFSIIEIIMFLVDVIHFQDDPNYQDRIGESTS 215

  Fly   120 -PEDSLLVYRPDQRLQLWRFLSYALLHASWLHLGYNVLTQLLFGVPLELVHGSLRTGVIYMAGVL 183
             |..:|.:|.|.:|.:.|||:||..:|...:||..|::.|:..|:.|||||...|.|::|:||||
  Fly   216 GPAATLFIYNPYKRYEGWRFVSYMFVHVGIMHLMMNLIIQIFLGIALELVHHWWRVGLVYLAGVL 280

  Fly   184 AGSLGTSVVDSEVFLVGASGGVYALLAAQLASLLLNFGQMRHGVIQLMAVILFVFCDLGYALYSR 248
            |||:|||:....:||.|||||||||:.|.:|::::|:.:|.:.::||:|.::|.|.|||.::|  
  Fly   281 AGSMGTSLTSPRIFLAGASGGVYALITAHIATIIMNYSEMEYAIVQLLAFLVFCFTDLGTSVY-- 343

  Fly   249 ELAMHQLQTRPSVSYIAHMTGALAGISVGLLLLRQLDGGLRPRPLRWLALGVWCIFSAFGIAFNL 313
               .|.......:.|:||::||:||:.||:.:||.|:.....|.|.|:|:.|:......||..::
  Fly   344 ---RHLTDQHDQIGYVAHLSGAVAGLLVGIGVLRNLEVRRWERILWWVAVIVYFALMTTGIIIHV 405

  Fly   314  313
              Fly   406  405

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ruNP_524790.1 Rhomboid 129..282 CDD:279958 65/152 (43%)
rho-4NP_525084.1 EFh_HEF <57..197 CDD:355006 24/153 (16%)
EFh 73..134 CDD:238008 7/60 (12%)
Rhomboid 226..374 CDD:396315 65/152 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 84 1.000 Domainoid score I2842
eggNOG 1 0.900 - - E1_COG0705
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D102232at50557
OrthoFinder 1 1.000 - - FOG0000995
OrthoInspector 1 1.000 - - mtm1037
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR45840
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X418
87.920

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