DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ru and Rhbdf2

DIOPT Version :10

Sequence 1:NP_524790.1 Gene:ru / 44856 FlyBaseID:FBgn0003295 Length:341 Species:Drosophila melanogaster
Sequence 2:NP_001100537.2 Gene:Rhbdf2 / 303690 RGDID:1309699 Length:825 Species:Rattus norvegicus


Alignment Length:172 Identity:45/172 - (26%)
Similarity:72/172 - (41%) Gaps:33/172 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   129 PDQRLQLWRFLSYALLHASWLHLGYNVLTQLLFGVPLELVHGSLRTGVIYMAGVLAGSLGTSVVD 193
            |||..::|..|   .|||..:|...:|:.|:.....||.:.|..|..:|::...:.|:|.     
  Rat   620 PDQFYRIWLSL---FLHAGIVHCLVSVVFQMTILRDLEKLAGWHRISIIFILSGITGNLA----- 676

  Fly   194 SEVFL-----VGASGGVYALLAAQLASLLLNFGQMRH---GVIQLMAVILFVF-CDLGYALYSRE 249
            |.:||     ||.:|..:.|||.....|..::..:..   ....|.|::||:| |.|        
  Rat   677 SAIFLPYRAEVGPAGSQFGLLACLFVELFQSWQLLERPWKAFFNLSAIVLFLFICGL-------- 733

  Fly   250 LAMHQLQTRPSVSYIAHMTGALAGISVGLLLLRQLDGGLRPR 291
                    .|.:..|||:.|.|:|:.:....|..:..|...|
  Rat   734 --------LPWIDNIAHIFGFLSGMLLAFAFLPYITFGTSDR 767

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ruNP_524790.1 Rhomboid 129..283 CDD:426384 43/162 (27%)
Rhbdf2NP_001100537.2 Rhomboid_SP 98..280 CDD:463639
Rhomboid 617..760 CDD:426384 43/163 (26%)
MFS 718..>808 CDD:475125 17/66 (26%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.