DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment ru and Rhbdl2

DIOPT Version :9

Sequence 1:	NP_524790.1	Gene:	ru / 44856	FlyBaseID:	FBgn0003295	Length:	341	Species:	Drosophila melanogaster
Sequence 2:	XP_038965543.1	Gene:	Rhbdl2 / 298512	RGDID:	1308295	Length:	302	Species:	Rattus norvegicus

Alignment Length:	234	Identity:	91/234 - (38%)
Similarity:	137/234 - (58%)	Gaps:	24/234 - (10%)

- Green bases have known domain annotations that are detailed below.

  Fly    97 PPFFIILATLLEVLVFLWVGADPPE-----------DSLLVYRPDQRLQLWRFLSYALLHASWLH 150
            ||.||:|.:|.|:.||::.....|:           :|.|.|||::|.:.|||:||.|:||...|
  Rat    70 PPLFIVLISLAELAVFIYYAVWKPQKQWITLDTGILESPLTYRPEKREEAWRFISYMLVHAGVQH 134

  Fly   151 LGYNVLTQLLFGVPLELVHGSLRTGVIYMAGVLAGSLGTSVVDSEVFLVGASGGVYALLAAQLAS 215
            :..|:..||:.|:|||:||..||.|::|:||||||||.:|:.|....|||||||||||:.....:
  Rat   135 IVGNLFMQLVLGIPLEMVHKGLRVGLVYLAGVLAGSLASSIFDPLKSLVGASGGVYALMGGYFMN 199

  Fly   216 LLLNFGQM--RHGVIQLMAVILFVFCDLGYALYSRELAMHQLQTRPS----VSYIAHMTGALAGI 274
            :::||.:|  ..|:::|:.:||.|..|:|:|||.|...       |:    ||:.||:.|..||:
  Rat   200 VIVNFREMIPALGIVRLLVIILIVASDMGFALYRRFFV-------PANGSPVSFAAHIAGGFAGM 257

  Fly   275 SVGLLLLRQLDGGLRPRPLRWLALGVWCIFSAFGIAFNL 313
            |||..:....|..|...|..|:::..:.....|.:.||:
  Rat   258 SVGYTVFSCFDKTLLKDPRFWISIAAYVACLLFAVFFNI 296

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
ru	NP_524790.1	Rhomboid	129..282	CDD:279958	70/158 (44%)
Rhbdl2	XP_038965543.1	Rhomboid	113..265	CDD:396315	70/158 (44%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0705
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1253228at2759
OrthoFinder	1	1.000	-	-		FOG0000995
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	4	3.820