DRSC/TRiP Functional Genomics Resources

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Protein Alignment ru and rom-2

DIOPT Version :10

Sequence 1:NP_524790.1 Gene:ru / 44856 FlyBaseID:FBgn0003295 Length:341 Species:Drosophila melanogaster
Sequence 2:NP_001366679.1 Gene:rom-2 / 183564 WormBaseID:WBGene00004401 Length:348 Species:Caenorhabditis elegans


Alignment Length:229 Identity:70/229 - (30%)
Similarity:112/229 - (48%) Gaps:29/229 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 PPFFIILATLLEVLVFL----------WVGADPPEDSLLVYRPDQRLQLWRFLSYALLHASWLHL 151
            ||.|:|..:::::..:|          |:....|..|.|:.......:|||..:|.|::....|:
 Worm   121 PPIFLIFLSIVQLAFYLYYVVDSSEGVWLSGPIPTMSPLIVSQYHLPELWRLFTYCLINVGIFHI 185

  Fly   152 GYNVLTQLLFGVPLELVHGSLRTGVIYMAGVLAGSLGTSVVDSEVFLVGASGGVYALLAAQLASL 216
            .:|:|.||..|||||||| ..|..::|..|||.||:.:..:|..|||.|.:.|.::|:|:.:.::
 Worm   186 IFNILIQLAIGVPLELVH-RWRIYILYFMGVLFGSILSLALDPTVFLCGGAAGSFSLIASHITTI 249

  Fly   217 LLNFGQMRHGVIQLMAVILFVFCDLGYALYSRELAMHQLQTRP---SVSYIAHMTGALAGISVGL 278
            ..||.:|.:...:|..:|:|...|...|:|.|..|       |   .||...|:.|.:|||....
 Worm   250 ATNFKEMENATCRLPILIVFAALDYVLAVYQRFFA-------PRIDKVSMYGHLGGLVAGILFTF 307

  Fly   279 LLLRQLDGGLRPRPLRWLALGVW--CIFSAFGIA 310
            :|.|      ..:|.|:..:..|  .:.|.|.||
 Worm   308 ILFR------GSKPSRFYTVSFWVSLVLSGFFIA 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ruNP_524790.1 Rhomboid 129..283 CDD:426384 53/156 (34%)
rom-2NP_001366679.1 EF-hand_7 21..82 CDD:463900
Rhomboid 165..313 CDD:426384 54/161 (34%)
Blue background indicates that the domain is not in the aligned region.

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