DRSC/TRiP Functional Genomics Resources

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Protein Alignment rib and ttk

DIOPT Version :9

Sequence 1:NP_001261085.1 Gene:rib / 44855 FlyBaseID:FBgn0003254 Length:680 Species:Drosophila melanogaster
Sequence 2:NP_001189329.1 Gene:ttk / 48317 FlyBaseID:FBgn0003870 Length:813 Species:Drosophila melanogaster


Alignment Length:731 Identity:161/731 - (22%)
Similarity:256/731 - (35%) Gaps:241/731 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 QTYCLRWNNHQTNLVQILHALHEVGSYVDCSLVVDDEQFQAHRVVLAANSPYFQHILKDVPQDHC 80
            |.:||||||||:||:.:...|....::.|.:|.|:.:..:||::||:|.||||..:....|:.|.
  Fly     6 QRFCLRWNNHQSNLLSVFDQLLHAETFTDVTLAVEGQHLKAHKMVLSACSPYFNTLFVSHPEKHP 70

  Fly    81 SIILPGVKGFEIAALLQYMYTGETTVTKSQEPEILRTAKELQVKGLYD-NLMKFNHASVTPTSSS 144
            .:||..|...::.:||.:||.||.:|.:.:....||.|:.|::|||.: |..|       |:.::
  Fly    71 IVILKDVPYSDMKSLLDFMYRGEVSVDQERLTAFLRVAESLRIKGLTEVNDDK-------PSPAA 128

  Fly   145 GAGGAKPQNGSASNHSSSVISTSTHISPSAAISSSCSPPPPPQFGYQPGYSHYPQQQPMSASQIP 209
            .|.||    |:..:.|::.......|.|                 |.....:..|...:.||...
  Fly   129 AAAGA----GATGSESTATTPQLQRIQP-----------------YLVPQRNRSQAGGLLASAAN 172

  Fly   210 AGEAPLTPTQATPHSAASGAGEAGGQWPLTPSAAAAMLNSVYESAADMNPLKR---KKLSAISSM 271
            ||..|..|.|                    ||..         |:|.|...||   :|||..|:.
  Fly   173 AGNTPTLPVQ--------------------PSLL---------SSALMPKRKRGRPRKLSGSSNG 208

  Fly   272 LLSGNR----DTPILRNVLAQANPADSSQPGPMNANGEKTPTHPHQNTQLPAGLGVSGGERNHSF 332
              :||.    |...:.|        |||..|    ||:..                     |.|:
  Fly   209 --TGNDYDDFDRENMMN--------DSSDLG----NGKMC---------------------NESY 238

  Fly   333 NGSDYGG-DKEPLSPYTDRSFEEETGQSGGKKPEWKRYKQY------------------TRADMM 378
            :|:|.|. |.:|.:.:||     :..:|....|. ||.|..                  |:|...
  Fly   239 SGNDDGSDDNQPNAGHTD-----DLNESRDSLPS-KRSKNSKDHRVVSHHEDNSTSVTPTKATPE 297

  Fly   379 CAIQAVREGMSALQASRKYGL---PSRT--------------------LYDKVRKLNITT--GRG 418
            .:.:......:.:.|:...|.   ||.|                    |..|:|.:|.||  .:|
  Fly   298 LSQRLFGSSSTTISATAPGGSSTGPSETISLLEISDERESAPVHLPTILGLKIRAINTTTPAQQG 362

  Fly   419 THRTPKRSPPGAESSQGFSYSAAAAAAAHNYGHGHGHHSEVKRDQKVDHVPAHHGMPPTIPPSAA 483
            :.:||.:|.|....:.|.:.|.:..            ..:::...|...||....:...:.|:||
  Fly   363 SPQTPTKSKPKIRQATGSNNSNSLL------------KQQLRGGAKDPEVPPATRITGAVTPNAA 415

  Fly   484 -------------------ALLDHAFLQQALENRGGDMAGREALHAMALAAAAHAAANRLSSSPA 529
                               |.:....|..|.|.:...:|....||...|   .|.|||....:..
  Fly   416 LNAEEQSKEMPKKNQDEVNACIGLHSLANAAEQQAAQVASTGNLHHQLL---LHMAANNSMLNTT 477

  Fly   530 EMDQRSNGHGMRSPSPQGRHYPHEQEAMDLEMEKHEQNIIKRERDQDEREDADDEEDHE------ 588
            :..|:..   ..|||..|:....:.|.:.|                ::::|..||.|||      
  Fly   478 DYYQQQQ---QESPSSAGQFMDDDLELLSL----------------NDQQDKSDEPDHEMVTLAD 523

  Fly   589 --------QEHVEDLSLARKERPPS------PYSPQPTEAGA------------------GVIMH 621
                    |.:..:.:.|:::.|.:      |.:|:..:.||                  ....|
  Fly   524 ENAGLPGYQGNEAEATPAQEDSPAAETATAPPPAPRSGKKGAKRPIQRRRVRRKAQSTLDDQAEH 588

  Fly   622 ASSASANGKDHVDYPS 637
            .:..|..|.|...|.|
  Fly   589 LTEMSVRGLDLFRYAS 604

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ribNP_001261085.1 BTB 33..133 CDD:279045 33/100 (33%)
BTB 44..133 CDD:197585 32/89 (36%)
HTH_psq 373..417 CDD:283007 13/68 (19%)
ttkNP_001189329.1 BTB 23..119 CDD:279045 32/95 (34%)
BTB 34..119 CDD:197585 31/84 (37%)
C2H2 Zn finger 612..638 CDD:275370
zf-C2H2_4 646..669 CDD:290605
C2H2 Zn finger 648..669 CDD:275370
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 59 1.000 Domainoid score I10373
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1229475at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm40394
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23110
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
55.020

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