DRSC/TRiP Functional Genomics Resources

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Protein Alignment rib and br

DIOPT Version :9

Sequence 1:NP_001261085.1 Gene:rib / 44855 FlyBaseID:FBgn0003254 Length:680 Species:Drosophila melanogaster
Sequence 2:NP_001162638.2 Gene:br / 44505 FlyBaseID:FBgn0283451 Length:1011 Species:Drosophila melanogaster


Alignment Length:670 Identity:163/670 - (24%)
Similarity:249/670 - (37%) Gaps:162/670 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 QTYCLRWNNHQTNLVQILHALHEVGSYVDCSLVVDDEQFQAHRVVLAANSPYFQHILKDVPQDHC 80
            |.:||||||:|:::......|.:..::||.:|..:....:||||||:|.||||:.:||..|..|.
  Fly     5 QHFCLRWNNYQSSITSAFENLRDDEAFVDVTLACEGRSIKAHRVVLSACSPYFRELLKSTPCKHP 69

  Fly    81 SIILPGVKGFEIAALLQYMYTGETTVTKSQEPEILRTAKELQVKGLYDNLMKFNHASVTPTSS-S 144
            .|:|..|...::.||::::|.||..|.:......|:||:.|:|.||.....:..|:.:....: :
  Fly    70 VILLQDVNFMDLHALVEFIYHGEVNVHQKSLQSFLKTAEVLRVSGLTQQQAEDTHSHLAQIQNLA 134

  Fly   145 GAGGAKPQNGSASN----HSSSVI---STSTHISPSAAISSSCSPPPPPQFGYQPGYSHYPQQQP 202
            .:||..|.|....:    |..|:.   .:||..|...|.|     |||......|.:.:....:.
  Fly   135 NSGGRTPLNTHTQSLPHPHHGSLHDDGGSSTLFSRQGAGS-----PPPTAVPSLPSHINNQLLKR 194

  Fly   203 MSASQIPAGEAPLTPT-----------QATPHSAASGAGEAGGQWPLTPSAAAAMLNSVYESAAD 256
            |:.....:..|....|           .:.|.|.|.|:|.......|.|..|.:.  |..::.||
  Fly   195 MAMMHRSSAAAAAEETSHAFKRLRGSDNSLPLSGAVGSGSNNNSPDLPPLHARSA--SPQQTPAD 257

  Fly   257 MN-----------PLKRKKLSAISSMLLSGNRD---------------------TPILRNVLAQA 289
            .:           |||.:|.:..:....|||.:                     ||   :.||:|
  Fly   258 FSTIKHHNNNNTPPLKEEKRNGPTGNGNSGNGNGNGNGASNGNGISISDKLGSLTP---SPLARA 319

  Fly   290 NPAD-SSQPGPM-------NANGEKTPTHPHQNTQLPAGLGVSGGERNHSFNGSDYG-GDKEPLS 345
            ...| .|:|..|       |||.|      |.|.        |.||  |..|.|..| |.|..||
  Fly   320 GADDVKSEPMDMVCSNNNANANDE------HSND--------STGE--HDANRSSSGDGGKGSLS 368

  Fly   346 PYTDRSFEEETGQ---SGGKKPEWKRYKQYTRADMMCAIQAVREGMSALQASRKYGLPSRTLYDK 407
            ...|    ||.|.   |....|::              |.:..|......|:  :..|:   .|.
  Fly   369 SGND----EEIGDGLASHHAAPQF--------------IMSPAENKMFHAAA--FNFPN---IDP 410

  Fly   408 VRKLNITTGRGTHRTPKRSPPGAESS---QGFSYSAAAAAAAHNYGHGHGHHSEVKRDQKVDHVP 469
            ...|.:.|..........||.|..:.   .|......:.....|....:.:::...:.|||:...
  Fly   411 SALLGLNTQLQQSGDLAVSPQGGSTGSLLSGVIVPGGSGGTPSNSSSNNNNNNSNNQQQKVEQQS 475

  Fly   470 A--------HHGMPPTIPPSAAALLDHAFLQQALENRGGDMAGREALHAMALAAAAHAAANRLSS 526
            :        ||..|.|..|.         |:|.....||.......||   :||.:..:.:|.|.
  Fly   476 SPHQLLQQQHHSTPHTNSPQ---------LKQEQPKSGGGSCKSSDLH---IAAGSERSLSRSSQ 528

  Fly   527 SPAEMDQRSNGHGMRSPSPQGRHYPHEQEAMDLEMEKHEQNIIKRERDQDEREDADDEEDHEQEH 591
            ...:    :.||. .:|||...::..|:|.             :|||:::...:.:...|||:  
  Fly   529 GMPD----AGGHS-ATPSPTAAYHKRERER-------------ERERERERERERERSLDHER-- 573

  Fly   592 VEDLSLARKERPPSPYSPQP 611
              ||     |||....||.|
  Fly   574 --DL-----ERPGGTGSPPP 586

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ribNP_001261085.1 BTB 33..133 CDD:279045 35/99 (35%)
BTB 44..133 CDD:197585 33/88 (38%)
HTH_psq 373..417 CDD:283007 7/43 (16%)
brNP_001162638.2 BTB 22..118 CDD:279045 35/95 (37%)
BTB 33..118 CDD:197585 33/84 (39%)
C2H2 Zn finger 712..729 CDD:275368
C2H2 Zn finger 742..763 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 59 1.000 Domainoid score I10615
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1229475at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm40394
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23110
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
55.020

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