DRSC/TRiP Functional Genomics Resources

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Protein Alignment rib and chinmo

DIOPT Version :10

Sequence 1:NP_001261085.1 Gene:rib / 44855 FlyBaseID:FBgn0003254 Length:680 Species:Drosophila melanogaster
Sequence 2:NP_722717.2 Gene:chinmo / 33343 FlyBaseID:FBgn0086758 Length:840 Species:Drosophila melanogaster


Alignment Length:638 Identity:136/638 - (21%)
Similarity:206/638 - (32%) Gaps:227/638 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 QTYCLRWNNHQTNLVQILHALHEVGSYVDCSLVVDDEQFQAHRVVLAANSPYFQHILKDVPQD-H 79
            |.:||:||:..:||......|.:.....|..|..|...|:||:::|||.|..|..:.::.|.: .
  Fly     5 QQFCLKWNSFSSNLAITFSNLFKSDLLADVILSCDGVVFKAHKLILAACSKKFADLFENTPTNGQ 69

  Fly    80 CSIILPGVKGFEIAALLQYMYTGETTVTKSQEPEILRTAKELQVKGLYDNLMKFNHASVTPTSSS 144
            |.|||.......:||||::||.||..|::......|::|:.||||||           .|.|...
  Fly    70 CVIILEATTPDNMAALLEFMYKGEVHVSQEALNSFLKSAESLQVKGL-----------STETGRL 123

  Fly   145 GAGGAKPQNGSASNHSSSVISTSTHISPSAAISSSCSPPPPPQFGYQPGYSHYPQQQPMSASQIP 209
            .|..|:...|..|...|.....|...|.|..                            |:|.:|
  Fly   124 AAQQAQQHMGDLSPLDSPTGRRSVRNSLSGG----------------------------SSSIVP 160

  Fly   210 AGEAPLTPTQATPHSAASGAG----------EAGGQWPLTPSAAAAMLNSVYESAADMNPLKRKK 264
            .|........||..::.||.|          .|||......:|||:.|:::   ||..|.:.|  
  Fly   161 GGVGIGLGGGATGANSMSGMGIGNGLSLAGMAAGGGMAAAANAAASSLSTL---AASANIVDR-- 220

  Fly   265 LSAISSMLLSGNRDTPILRNVLAQANPADSSQPGPMNANGEKTPTHPHQNTQLPAGLGVSGGERN 329
            ..:..:.::||           :.|....|...|..|.:|          |....|.||..|   
  Fly   221 CGSAGANIISG-----------SAAGIGGSHSGGAGNGSG----------TVGIGGNGVGSG--- 261

  Fly   330 HSFNGSDYGGDKEPLSPYTDRSFEEETGQSGGKKPEWKRYKQYTRADMMCAIQAVREGMSALQAS 394
                    ||:..|:|..:........|.|.|                     .:::...:|.  
  Fly   262 --------GGNNGPISLGSGAGAAHHLGGSTG---------------------ILKQECDSLM-- 295

  Fly   395 RKYGLPSRTLYDKVRKLNITTGRGTHRTPKRSPPGAESSQGFSYSAAAAAAAHNYGHGHGHHSEV 459
                                           .|.|:.||.|..|:                    
  Fly   296 -------------------------------HPGGSSSSSGMGYT-------------------- 309

  Fly   460 KRDQKVDHVPAHHGMPPTIPPSAAALLDHAFLQQALENRGGDM------------AGREALHAMA 512
                   |||..:......||...|::...:.:|  |.||..:            ..:...|..:
  Fly   310 -------HVPPIYRPINYEPPRKRAIVRSPYSEQ--EQRGSVLRDGSKSSECPSPINKPPYHRPS 365

  Fly   513 LAAAAHAAANRLSSSPAEMDQRSNGHGMRSPSPQGRHYPHEQEAMDLEMEKHE------------ 565
            .:|:        |::|.|.|..   |..|: |||...|           |.|.            
  Fly   366 SSAS--------STAPTEADTM---HSERA-SPQSSRY-----------ENHSPSTTAGNGNATS 407

  Fly   566 --QNIIKRERDQDEREDADDEE----DHEQEH-VEDLSLARKERPPSPYSPQP 611
              :.|:|.||:.....:|:|::    |...:: .|||   |.:.....|||.|
  Fly   408 SLERIVKSERNNGSANEANDDDRELMDESTDNGAEDL---RVKLENLKYSPPP 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ribNP_001261085.1 BTB_POZ_BAB-like 42..125 CDD:349624 30/83 (36%)
HTH_psq 373..417 CDD:283007 1/43 (2%)
chinmoNP_722717.2 BTB_POZ_BAB-like 31..115 CDD:349624 30/83 (36%)
C2H2 Zn finger 519..540 CDD:275368
C2H2 Zn finger 547..568 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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