DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment raw and olrn-1

DIOPT Version :9

Sequence 1:NP_001188733.1 Gene:raw / 44851 FlyBaseID:FBgn0003209 Length:989 Species:Drosophila melanogaster
Sequence 2:NP_001359691.1 Gene:olrn-1 / 181642 WormBaseID:WBGene00007260 Length:556 Species:Caenorhabditis elegans


Alignment Length:691 Identity:145/691 - (20%)
Similarity:225/691 - (32%) Gaps:265/691 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   342 KKKNATNEPVEVFLGGSCNPTTWRADVAIPALKELGISFYNPQVSDWTPDLIELEHRAKEKARVL 406
            :|..::.|..:|||||||..|.||....||.||:.||::|:||.|.|:.::|..|..|||.:.:.
 Worm    69 EKPTSSRETYDVFLGGSCGTTVWRRQSVIPFLKKRGITYYDPQRSFWSENMIYEESIAKESSSLF 133

  Fly   407 FFVMDSETRASAGAIEAAHIAGQNCKQLVLVL----------HPYKPNQKILNEPISQQEYLDLN 461
            .||:|..|..:...:|.|:.|.:...:||:|.          ||              .:..|.|
 Worm   134 LFVIDPATVNATSFLEIAYFAARKSPKLVVVFLGKTEWAEKAHP--------------DDLPDRN 184

  Fly   462 RNQLILKELVSRRGLPVLDNIPLGLQ-RTKDILG------GIRDPPSKISSILDTVRGAFDRVNP 519
            |...:|..::....:|:|..||..|: ..:::||      .:|...:::..:....|.....|..
 Worm   185 RTCQLLDRILECHQVPMLHTIPDALEFIEEEMLGRQSLTEAMRSKNNRLPYLQIRARRVVRNVKS 249

  Fly   520 LNDLLTVEQCKR--------------ALLFLGYA-------QSLVNLDNLNKIIINQRESLKLLQ 563
            | ...|::.||.              .||.:.:|       ..||.|..||.:.......::.|:
 Worm   250 L-AAQTIKVCKNYATKTVVTGLIDLTVLLSISFAFPALPLFYILVPLLMLNIVFFGVIYKVQELR 313

  Fly   564 THSPRAVADDADADGGNCSQPILPSQELIDFDLFCVISAYLSVLQQEIHESGCISPIKGTNVPPP 628
            ...||.:||.                           ||.:      .|.:..|        |.|
 Worm   314 KRYPRMIADS---------------------------SAVM------YHATAAI--------PSP 337

  Fly   629 QVYFTNAPDVDIYYSASKNISRTSSNASVPSNSSSGIGHDLERQSL--FEQLSRSRDSGTSS--- 688
            :|                .:..|:.|.::.|.:.      :.|:|.  ||:.... |||.||   
 Worm   338 RV----------------TLKATNVNGTISSKTL------VRRRSKQNFEKFFPD-DSGASSFIV 379

  Fly   689 PQPTGSSSLGKSPRPQILLNVESIETTEIITTKTIETKPNPVTASTVVHAEEEESDSNDSVLSSN 753
            |    ||.|.|..                      |||.| :..|.|........|::       
 Worm   380 P----SSFLPKQH----------------------ETKVN-IDCSVVELCSSSPDDNS------- 410

  Fly   754 SSIASAGDILCCGGGLDLRDVYLGGSCVLRTKWRQELAVPYLQSKGVSFHTPALHESIQQMILNQ 818
                                            |.||||.|.|..||..:          ..:|  
 Worm   411 --------------------------------WVQELAAPTLDGKGTPY----------SYVL-- 431

  Fly   819 EQNQDQSQQPTVPPQEQQQQQRSFVRTRRKCRGNQLQLEEQEELTVAEESLSWSLPPVAVRQSLF 883
                       ..|..|...:.:.:||                         |            
 Worm   432 -----------ATPNFQLDNRMNCLRT-------------------------W------------ 448

  Fly   884 NPSLLDSSRVLLFVITNETRSLAPMTLAAHCIG-LMYNVVLAV----QML--PEDCVLGDEKLTV 941
                ....:...:.|.:.|..|:.|...|:.:| ..:...:.|    |:|  |:| :..|||...
 Worm   449 ----FHHHKKFFYYIPSTTTFLSGMVEIAYILGHTNWEGTVCVPATSQILEGPDD-MTADEKDHA 508

  Fly   942 AAIKD-----YNRGRSYLIDLAKRQGVPVFSDIRAALECTV 977
            .|.:.     |.....||.|:|||:...||:||..|::..|
 Worm   509 RAARRRRNDCYQIAFCYLKDMAKRRQCRVFTDIGVAVKALV 549

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rawNP_001188733.1 Nuc_deoxyri_tr2 352..441 CDD:292515 37/98 (38%)
olrn-1NP_001359691.1 Nuc_deoxyri_tr2 79..164 CDD:379753 35/84 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 74 1.000 Domainoid score I5964
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1148514at2759
OrthoFinder 1 1.000 - - FOG0016737
OrthoInspector 1 1.000 - - oto17709
orthoMCL 1 0.900 - - OOG6_111927
Panther 1 1.100 - - LDO PTHR36300
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R17042
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.040

Return to query results.
Submit another query.