DRSC/TRiP Functional Genomics Resources

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Protein Alignment pnr and ZML2

DIOPT Version :9

Sequence 1:NP_476685.1 Gene:pnr / 44849 FlyBaseID:FBgn0003117 Length:540 Species:Drosophila melanogaster
Sequence 2:NP_564593.1 Gene:ZML2 / 841585 AraportID:AT1G51600 Length:302 Species:Arabidopsis thaliana


Alignment Length:119 Identity:31/119 - (26%)
Similarity:37/119 - (31%) Gaps:43/119 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 SNRQYNHVAAHFGSAAAQN-AWTTEGFGSAHAQFYSPNAAVMMGSWRSAYDPSGFQRSSPYESAM 159
            |.:..|..||..||:...| .|..|...:.|.:.                               
plant   188 SAKSNNDEAASAGSSWGSNQTWAIESSEAQHQEI------------------------------- 221

  Fly   160 DFQFGEGRECVNC--GAISTPLWRRDGTG-HYLCNACGLYHKMNGMNRPLIKPS 210
                    .|.:|  |..|||:.||...| ..|||||||.....|..|.|.|.|
plant   222 --------SCRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANKGAFRDLSKAS 267

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pnrNP_476685.1 ZnF_GATA 164..212 CDD:214648 21/50 (42%)
ZnF_GATA 168..212 CDD:238123 21/46 (46%)
ZnF_GATA 223..270 CDD:214648
ZnF_GATA 226..276 CDD:238123
ZML2NP_564593.1 tify 78..111 CDD:399304
CCT 147..190 CDD:399306 1/1 (100%)
ZnF_GATA 222..>265 CDD:238123 19/42 (45%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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