DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pnr and Trps1

DIOPT Version :9

Sequence 1:NP_476685.1 Gene:pnr / 44849 FlyBaseID:FBgn0003117 Length:540 Species:Drosophila melanogaster
Sequence 2:XP_006521623.1 Gene:Trps1 / 83925 MGIID:1927616 Length:1296 Species:Mus musculus


Alignment Length:398 Identity:101/398 - (25%)
Similarity:139/398 - (34%) Gaps:124/398 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 ASAGVGVGVSGYHQQAV---NAPVYVPSNRQYNHVAAHFGSAAAQNAWTTEGFGSAHAQFYSPNA 133
            ||.||...||...:|..   ::|         |..|||........|..|:||...     :|..
Mouse   813 ASLGVLTPVSSSQEQTKTLRDSP---------NVEAAHLARPMYGLAVDTKGFLQG-----APAG 863

  Fly   134 AVMMGSWRSAYDPSGFQRSSPYESAMDFQFGEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHK 198
            :....|....|..||..::.          .|.:..:....||       ||             
Mouse   864 SEKSASLTQQYPASGESKTK----------DESQSLLRAVTIS-------GT------------- 898

  Fly   199 MNGMNRPLIKPSKRLVSATATRRMGLCCTNCGTRTTTLWRRNNDGEPVCNACGLYYKLHGVNRPL 263
                      |::|     ..|..|:.|.||.|..|:|||:|.:|..||||||||.|||...|||
Mouse   899 ----------PNRR-----RRRGSGVFCANCLTTKTSLWRKNANGGYVCNACGLYQKLHSTPRPL 948

  Fly   264 AMRK--DGIQTRKRKPKKTGSGSAV----------GAGTGSGTGSTLEAIKE--CKEEHDLKPSL 314
            .:.|  :|.|..:|:.:|..:..|:          |:|.....||.||...|  ..|.|..:..|
Mouse   949 NIIKQNNGEQIIRRRTRKRLNPEALQAEQLNKQQRGSGEEQVNGSPLERRSEDHLSESHPREIPL 1013

  Fly   315 SLERHSLSKLHTDMKSGTSSSSTLMGHHSAQQQQQQQQQQQQQQQQQQQQSAHQQCFPLYGQTTT 379
            .    ||||.        .:..:|...|||          ||.....|....|::..||:.|..:
Mouse  1014 P----SLSKY--------EAQGSLTKSHSA----------QQPVLVSQALDIHKRMQPLHIQIKS 1056

  Fly   380 QQQHQ-QHGHSMTSSSGQAHLSARHLHGAAGTQLYTPGSSSGGGSASAY---TSHSAETPALSNG 440
            .|:.. ..|:|.:.|.|:                   |||..|.....|   ..|...:|.   |
Mouse  1057 PQESTGDPGNSSSVSDGK-------------------GSSERGSPIEKYMRPAKHPNYSPP---G 1099

  Fly   441 TPSPHYQH 448
            :|...||:
Mouse  1100 SPIEKYQY 1107

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pnrNP_476685.1 ZnF_GATA 164..212 CDD:214648 6/47 (13%)
ZnF_GATA 168..212 CDD:238123 5/43 (12%)
ZnF_GATA 223..270 CDD:214648 26/48 (54%)
ZnF_GATA 226..276 CDD:238123 27/51 (53%)
Trps1XP_006521623.1 ZnF_GATA 910..966 CDD:238123 28/55 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

Return to query results.
Submit another query.