DRSC/TRiP Functional Genomics Resources

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Protein Alignment pnr and GATA10

DIOPT Version :10

Sequence 1:NP_476685.1 Gene:pnr / 44849 FlyBaseID:FBgn0003117 Length:540 Species:Drosophila melanogaster
Sequence 2:NP_172278.1 Gene:GATA10 / 837315 AraportID:AT1G08000 Length:308 Species:Arabidopsis thaliana


Alignment Length:260 Identity:60/260 - (23%)
Similarity:94/260 - (36%) Gaps:85/260 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LSDGDSTSDQQSTRDYPHFSGDY-----------QNVTLSAASASTSASASATHV-------AAV 51
            |.|.|||:.:          ||:           .::..:..|..||....|..|       .|:
plant    33 LEDIDSTNGE----------GDWVARFQDLEPPPLDMFPALPSDLTSCPKGAARVRIPNNMIPAL 87

  Fly    52 KMYHSSAVAAYTDLAAAGSAASAGVGVGVSGYHQQAVNAPVYVPSNRQYNHVAAHFGSAAAQN-- 114
            |...||  .|.:.:.:....:||...:.||...|..  .||.|..|        .:||.:.||  
plant    88 KQSCSS--EALSGINSTPHQSSAPPDIKVSYLFQSL--TPVSVLEN--------SYGSLSTQNSG 140

  Fly   115 ----AWTTEGFGSAHAQFYSPNAAVMMGSWRSAYDPSGFQRSSPYESAMDFQF------------ 163
                |:..:|..|...:   |....:  |:...::|   ::|:|.||..:..:            
plant   141 SQRLAFPVKGMRSKRRR---PTTVRL--SYLFPFEP---RKSTPGESVTEGYYSSEQHAKKKRKI 197

  Fly   164 -----------------GEGRECVNCGAISTPLWRRDGTG-HYLCNACGLYHKMNGMNRPLIKPS 210
                             |..|.|.:|..|:||.||:..:| ..||||||:..| :|...|..:|:
plant   198 HLITHTESSTLESSKSDGIVRICTHCETITTPQWRQGPSGPKTLCNACGVRFK-SGRLVPEYRPA 261

  Fly   211  210
            plant   262  261

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pnrNP_476685.1 ZnF_GATA 168..212 CDD:238123 18/44 (41%)
ZnF_GATA 226..276 CDD:238123
GATA10NP_172278.1 ZnF_GATA 215..268 CDD:214648 20/48 (42%)
Blue background indicates that the domain is not in the aligned region.

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