DRSC/TRiP Functional Genomics Resources

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Protein Alignment pnr and GATA5

DIOPT Version :9

Sequence 1:NP_476685.1 Gene:pnr / 44849 FlyBaseID:FBgn0003117 Length:540 Species:Drosophila melanogaster
Sequence 2:NP_201433.1 Gene:GATA5 / 836764 AraportID:AT5G66320 Length:339 Species:Arabidopsis thaliana


Alignment Length:244 Identity:51/244 - (20%)
Similarity:87/244 - (35%) Gaps:56/244 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 ILLSDGDSTSDQQSTRDYPHFSG--DYQNVTLSAASASTSASASATHVAAVKMYHSSAVAAYTDL 65
            :.:|..:...|..:.|....|||  |:.::..|      ..|..|..:|.::........::|:.
plant    69 VRVSSEEPNDDGDALRRSSDFSGCDDFGSLPTS------ELSLPADDLANLEWLSHFVEDSFTEY 127

  Fly    66 AAAGSAASAGVGVGVSGYHQQAVNAPVYVPSNRQY------------NHVAAHFGSAAAQNAWTT 118
            :          |..::|   .....|.::..:|::            :.|.|...|...:|....
plant   128 S----------GPNLTG---TPTEKPAWLTGDRKHPVTAVTEETCFKSPVPAKARSKRNRNGLKV 179

  Fly   119 EGFGSAHAQFYSPNAAVMMGS------WRSA---YDPSGFQRSSPY------ESAMDFQFGE--- 165
            ...||:.:...|.:.:....|      |.|.   .:|.......|:      .||.....||   
plant   180 WSLGSSSSSGPSSSGSTSSSSSGPSSPWFSGAELLEPVVTSERPPFPKKHKKRSAESVFSGELQQ 244

  Fly   166 ---GRECVNCGAISTPLWRRDGTG-HYLCNACGLYHKMNGMNRPLIKPS 210
               .|:|.:||...||.||....| ..||||||:.:| :|...|..:|:
plant   245 LQPQRKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYK-SGRLLPEYRPA 292

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pnrNP_476685.1 ZnF_GATA 164..212 CDD:214648 21/54 (39%)
ZnF_GATA 168..212 CDD:238123 18/44 (41%)
ZnF_GATA 223..270 CDD:214648
ZnF_GATA 226..276 CDD:238123
GATA5NP_201433.1 ZnF_GATA 249..299 CDD:214648 19/45 (42%)
GATA 251..286 CDD:278735 16/35 (46%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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