DRSC/TRiP Functional Genomics Resources

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Protein Alignment pnr and GATA27

DIOPT Version :9

Sequence 1:NP_476685.1 Gene:pnr / 44849 FlyBaseID:FBgn0003117 Length:540 Species:Drosophila melanogaster
Sequence 2:NP_199525.2 Gene:GATA27 / 834760 AraportID:AT5G47140 Length:470 Species:Arabidopsis thaliana


Alignment Length:234 Identity:51/234 - (21%)
Similarity:81/234 - (34%) Gaps:79/234 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   226 CTNCGTRTTTLWRRNNDGEPV-CNACGLYYKLHG--VN-RPLAMRKDGIQTR------------- 273
            |.:||..:|.|||.....:|| |||||..::..|  || .||..|.:|.:|.             
plant     7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGSLVNYTPLHARAEGDETEIEDHRTQTVMIKG 71

  Fly   274 --------KRKP----------------------------KKTGSGSAVGAGTGSGTGSTLEAIK 302
                    ||||                            .::.|||.|.........:..::..
plant    72 MSLNKKIPKRKPYQENFTVKRANLEFHTGFKRKALDEEASNRSSSGSVVSNSESCAQSNAWDSTF 136

  Fly   303 ECKEEHDL-KPSLSLERHSLSK-LHTDMK-------SGTS--------SSSTLMGHHSAQQQQQQ 350
            .||....: :|..:.....|:| |:|.::       ||||        .:..|:||.|...:...
plant   137 PCKRRTCVGRPKAASSVEKLTKDLYTILQEQQSSCLSGTSEEDLLFENETPMLLGHGSVLMRDPH 201

  Fly   351 QQQQQQQQ-------QQQQQQSAHQQCFPLYGQTTTQQQ 382
            ...::::.       :..:..|.|...|.  |:...|:|
plant   202 SGAREEESEASSLLVESSKSSSVHSVKFG--GKAMKQEQ 238

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pnrNP_476685.1 ZnF_GATA 164..212 CDD:214648
ZnF_GATA 168..212 CDD:238123
ZnF_GATA 223..270 CDD:214648 20/47 (43%)
ZnF_GATA 226..276 CDD:238123 23/74 (31%)
GATA27NP_199525.2 ZnF_GATA 6..54 CDD:238123 20/46 (43%)
ASXH 235..>322 CDD:372815 2/4 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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