DRSC/TRiP Functional Genomics Resources

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Protein Alignment pnr and GATA23

DIOPT Version :9

Sequence 1:NP_476685.1 Gene:pnr / 44849 FlyBaseID:FBgn0003117 Length:540 Species:Drosophila melanogaster
Sequence 2:NP_198045.1 Gene:GATA23 / 832751 AraportID:AT5G26930 Length:120 Species:Arabidopsis thaliana


Alignment Length:105 Identity:29/105 - (27%)
Similarity:46/105 - (43%) Gaps:22/105 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   204 RPLIKPSKRLVSATATRRMGL--CCTNCGTRTTTLWRRNNDG-EPVCNACGLYYK------LHGV 259
            |.|:..|...||.......|.  ||:.|.|..|.:||....| :.:|||||:.::      |.|:
plant     4 RKLLSCSSSYVSVRMKEEKGTIRCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSELLGI 68

  Fly   260 -----NRPLAMRK--------DGIQTRKRKPKKTGSGSAV 286
                 ::.||.:|        .|:..:||:..|....:|:
plant    69 HIIRSHKSLASKKINLLSSSHGGVAVKKRRSLKEEEQAAL 108

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pnrNP_476685.1 ZnF_GATA 164..212 CDD:214648 3/7 (43%)
ZnF_GATA 168..212 CDD:238123 3/7 (43%)
ZnF_GATA 223..270 CDD:214648 19/68 (28%)
ZnF_GATA 226..276 CDD:238123 19/69 (28%)
GATA23NP_198045.1 ZnF_GATA 23..>62 CDD:214648 14/38 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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