DRSC/TRiP Functional Genomics Resources

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Protein Alignment pnr and GATA19

DIOPT Version :9

Sequence 1:NP_476685.1 Gene:pnr / 44849 FlyBaseID:FBgn0003117 Length:540 Species:Drosophila melanogaster
Sequence 2:NP_195380.1 Gene:GATA19 / 829814 AraportID:AT4G36620 Length:211 Species:Arabidopsis thaliana


Alignment Length:229 Identity:48/229 - (20%)
Similarity:78/229 - (34%) Gaps:69/229 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 GFGSAHAQFYSPNAAVMMGSWRSAYDPSGFQRSSPYESAMDFQFGEGREC-VNCGAISTPLWRRD 183
            ||    :.|:||...|.             ..||||.|.         :| ::.|..||.|...|
plant     2 GF----SMFFSPENDVS-------------HHSSPYASV---------DCTLSLGTPSTRLCNED 40

  Fly   184 GTGHYLCNACGLYHKMNGMNRPLIKPSKRLVSATATRRMGLCCTNCGTRTTTLWRRNNDG-EPVC 247
            ....:..      |..:.:....:..||:.........:...|.||.|.:|.|||....| :.:|
plant    41 DERRFSS------HTSDTIGWDFLNGSKKGGGGGGHNLLARRCANCDTTSTPLWRNGPRGPKSLC 99

  Fly   248 NACGLYYKLHGVNRPLAMRKDGIQTRKRKPKKTGSGSAVGAGTGSGTGSTLEAIKECKEEHDLKP 312
            ||||:.:|                 ::.:...|...|.      ||.|||...:.          
plant   100 NACGIRFK-----------------KEERRASTARNST------SGGGSTAAGVP---------- 131

  Fly   313 SLSLERHSLSKLHTDMKSGTSSSSTLMGHHSAQQ 346
              :|:..:.:..:.:..:..:|||.....|:.|:
plant   132 --TLDHQASANYYYNNNNQYASSSPWHHQHNTQR 163

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pnrNP_476685.1 ZnF_GATA 164..212 CDD:214648 8/48 (17%)
ZnF_GATA 168..212 CDD:238123 8/44 (18%)
ZnF_GATA 223..270 CDD:214648 15/47 (32%)
ZnF_GATA 226..276 CDD:238123 15/50 (30%)
GATA19NP_195380.1 ZnF_GATA 75..123 CDD:214648 18/70 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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