DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment pnr and GATA26

DIOPT Version :9

Sequence 1:	NP_476685.1	Gene:	pnr / 44849	FlyBaseID:	FBgn0003117	Length:	540	Species:	Drosophila melanogaster
Sequence 2:	NP_001190755.1	Gene:	GATA26 / 827474	AraportID:	AT4G17570	Length:	526	Species:	Arabidopsis thaliana

Alignment Length:	310	Identity:	60/310 - (19%)
Similarity:	95/310 - (30%)	Gaps:	112/310 - (36%)

- Green bases have known domain annotations that are detailed below.

  Fly   228 NCGTRTTTLWRRNNDGEPV-CNACGLYYKLHG--VN-RPLAMRKDG------------------- 269
            ||   .|.|||.....:|| |||||..::..|  || .||..|.||
plant    24 NC---YTPLWRNGPPEKPVLCNACGSRWRTKGTLVNYTPLHARADGDENDDHHRFQRMKSISLGN 85

  Fly   270 ----IQTRKRK----------------------------PKKTGSGSAVG-----AGTGSGTGST 297
                |:..|||                            ..::.|||||.     |...|..||.
plant    86 KNKEIKMLKRKAIQENIIIKRPVFEFSYGLKAAVIEEDASNRSSSGSAVSNSESCAQFSSADGSE 150

  Fly   298 L---------EAIKECKEEHDL-KPSLSLERHSLSKLHTDMKSGTSSSSTLMGHHSAQQQQQQQQ 352
            |         :....||....: :|..|    |:.||..|:            ::..|:||....
plant   151 LTGPSQSNAWDTTVPCKRRTCVGRPKSS----SVEKLTKDL------------YNILQEQQSSCL 199

  Fly   353 QQQQQQQQQQQQSAHQQCFPL-YGQTTTQQQH------QQHGHSMTSSSGQAHLSARHLHGAAGT 410
            ....::....:.........: :|....:..|      :....|::|...::.:|..:.|.....
plant   200 SVSSEEDLLFENEMSMVSVEIGHGSVLMKNPHSFAREEESEASSLSSIENKSSISDAYSHSVKRV 264

  Fly   411 QLYTPGSSSGGGSA---SAYTSHSAETPALSNGTPSPHYQHHHHLGGTHG 457
            ::.....|..||..   ..:....::|..:             |:.|:||
plant   265 EIGAVRGSYYGGQTIKQEQFKRTKSQTERV-------------HVLGSHG 301

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
pnr	NP_476685.1	ZnF_GATA	164..212	CDD:214648
		ZnF_GATA	168..212	CDD:238123
		ZnF_GATA	223..270	CDD:214648	21/68 (31%)
		ZnF_GATA	226..276	CDD:238123	23/74 (31%)
GATA26	NP_001190755.1	ZnF_GATA	24..>63	CDD:238123	18/41 (44%)
GATA26	NP_001190755.1	ASXH	285..>372	CDD:290630	5/30 (17%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5641
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.900