DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pnr and AT4G16141

DIOPT Version :9

Sequence 1:NP_476685.1 Gene:pnr / 44849 FlyBaseID:FBgn0003117 Length:540 Species:Drosophila melanogaster
Sequence 2:NP_680707.4 Gene:AT4G16141 / 827301 AraportID:AT4G16141 Length:197 Species:Arabidopsis thaliana


Alignment Length:143 Identity:37/143 - (25%)
Similarity:52/143 - (36%) Gaps:49/143 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   164 GEG----RECVNCGAISTPLWRRDGTG-HYLCNACGLYHKMN-----GMNRPLIKPSKRLVSATA 218
            |.|    :.||:||...|||||....| ..||||||:..:..     |:.:..||     :.:.:
plant    30 GSGGDTKKTCVDCGTSRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGIRQDDIK-----IKSKS 89

  Fly   219 TRRMGLCCTNCGTRTTTLWRRNNDGEPVCNACGLYYKLHGVNRPLAMRKDGI------------Q 271
            ...:||...|..|         ..|||             ||..:|..:.||            .
plant    90 NNNLGLESRNVKT---------GKGEP-------------VNVKIAKCEPGIVKIAKGEPGNVKN 132

  Fly   272 TRKRKPKKTGSGS 284
            ..||.|:.:.|.:
plant   133 KIKRDPENSSSSN 145

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pnrNP_476685.1 ZnF_GATA 164..212 CDD:214648 21/57 (37%)
ZnF_GATA 168..212 CDD:238123 19/49 (39%)
ZnF_GATA 223..270 CDD:214648 10/46 (22%)
ZnF_GATA 226..276 CDD:238123 11/61 (18%)
AT4G16141NP_680707.4 GATA 39..73 CDD:395253 16/33 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.