DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pnr and GATA29

DIOPT Version :9

Sequence 1:NP_476685.1 Gene:pnr / 44849 FlyBaseID:FBgn0003117 Length:540 Species:Drosophila melanogaster
Sequence 2:NP_188711.1 Gene:GATA29 / 821623 AraportID:AT3G20750 Length:208 Species:Arabidopsis thaliana


Alignment Length:70 Identity:26/70 - (37%)
Similarity:36/70 - (51%) Gaps:12/70 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   132 NAAVMMGSWRSAYDPSGFQRSSPYESAMDFQFG--EG-REC--VNCGAISTPLWRRDGTG-HYLC 190
            |:.||..||:....|...:      ....|..|  || ::|  :||.|::||:|||...| ..||
plant   125 NSTVMTNSWKENATPKRIR------GCGGFCGGRIEGMKKCTNMNCNALNTPMWRRGPLGPKSLC 183

  Fly   191 NACGL 195
            ||||:
plant   184 NACGI 188

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pnrNP_476685.1 ZnF_GATA 164..212 CDD:214648 19/38 (50%)
ZnF_GATA 168..212 CDD:238123 16/31 (52%)
ZnF_GATA 223..270 CDD:214648
ZnF_GATA 226..276 CDD:238123
GATA29NP_188711.1 GATA 163..192 CDD:395253 15/26 (58%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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