DRSC/TRiP Functional Genomics Resources

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Protein Alignment pnr and trps1

DIOPT Version :9

Sequence 1:NP_476685.1 Gene:pnr / 44849 FlyBaseID:FBgn0003117 Length:540 Species:Drosophila melanogaster
Sequence 2:NP_001171405.1 Gene:trps1 / 795613 ZFINID:ZDB-GENE-030131-8404 Length:1243 Species:Danio rerio


Alignment Length:458 Identity:112/458 - (24%)
Similarity:153/458 - (33%) Gaps:154/458 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 AAAGSAASAGVGVGVSGYHQQAVNAPVYVPSNRQYNHVAAHFGSAAAQNAWTTEGFGSAHAQFYS 130
            |.||.|..||         :|.|.:.|:||..|.                               
Zfish   721 ALAGGAVRAG---------EQHVQSLVWVPKERA------------------------------- 745

  Fly   131 PNAAVMMGSWRSAYDPSGFQRSSPYESAMDFQFGEGRE-CVNCGAISTPLWRRDGTG-------- 186
              ..::.||      |:.|.::|  ...::...|.|:| ....||  |.|  ||.||        
Zfish   746 --GEILRGS------PAPFPQAS--LGLLNAVAGGGKEPQTQKGA--TML--RDSTGLMFSLSAD 796

  Fly   187 --HYLCNA-CGLYHKMNGMNRPLI---KPSKRLVSATATRR--MGLCCTNCGTRTTTLWRRNNDG 243
              .||... .|...| .|...|..   |.:|....:...||  .|:.|.||.|..|:|||:|.:|
Zfish   797 AKGYLSGTPAGAVEK-GGQQYPSATEGKSAKEESQSLLRRRRGSGVFCANCLTTKTSLWRKNANG 860

  Fly   244 EPVCNACGLYYKLHGVNRPLAMRK--DGIQTRKRKPKKTGSGSAVGAGTGSGTGSTLEAIKECKE 306
            ..||||||||.|||...|||.:.|  :|.|..:|:.:|..:...:   .....||..:.:   ..
Zfish   861 GYVCNACGLYQKLHSTPRPLNIIKQNNGEQIIRRRTRKRLNPDPM---PSEQVGSKQQRV---NS 919

  Fly   307 EHDLKPSLSLERH--------SLSKLHTDMK------SGTSSSSTLMGHHSAQQQQQQQQQQQQQ 357
            |..|..| .|||.        |||:....:|      |||.|..:....|:....|..:      
Zfish   920 EERLNGS-PLERRTEDNGSDGSLSRAEAQVKYEAYGPSGTKSHPSPRSTHAFLVNQTLE------ 977

  Fly   358 QQQQQQQSAHQQCFPLYGQTTTQQQHQQHGHSMTSSSGQAHLSARHL--HGAAGTQLYTPGSSSG 420
                    .|::..||            |.|......|.|..:...|  .||.|     .|.|..
Zfish   978 --------IHKRMPPL------------HMHKSPVDGGSAEGNGLSLGPQGADG-----KGGSER 1017

  Fly   421 GGSASAYTSHSAETPALSNGTPSPHYQH--------HHHL------------------GGTHGHH 459
            |.....|...|.:......|:|...||:        |:.|                  |...||:
Zfish  1018 GSPIEKYMRPSKQASYSPPGSPIEKYQYPIFSLPFLHNDLQNETDWLRFWTKYKMSVPGNAAGHY 1082

  Fly   460 VTA 462
            ::|
Zfish  1083 LSA 1085

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pnrNP_476685.1 ZnF_GATA 164..212 CDD:214648 18/62 (29%)
ZnF_GATA 168..212 CDD:238123 16/58 (28%)
ZnF_GATA 223..270 CDD:214648 26/48 (54%)
ZnF_GATA 226..276 CDD:238123 27/51 (53%)
trps1NP_001171405.1 ZnF_GATA 838..881 CDD:214648 24/42 (57%)
ZnF_GATA 842..898 CDD:238123 28/55 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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