DRSC/TRiP Functional Genomics Resources

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Protein Alignment pnr and gata5

DIOPT Version :9

Sequence 1:NP_476685.1 Gene:pnr / 44849 FlyBaseID:FBgn0003117 Length:540 Species:Drosophila melanogaster
Sequence 2:XP_031749920.1 Gene:gata5 / 496852 XenbaseID:XB-GENE-484906 Length:437 Species:Xenopus tropicalis


Alignment Length:389 Identity:156/389 - (40%)
Similarity:194/389 - (49%) Gaps:93/389 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 STSASASATHVAAVK----MYHSSAVAAYTDLAAAGSAASAGVGVGVSGYHQQAVNAPVYVPSNR 98
            :|::||:...||..|    ::.|.....|..||...:.|........|.:.....:.|||||::|
 Frog    22 NTTSSANLPGVAGRKAQPVLFGSYRRIMYPSLALTANHAQPAYSHDPSNFLHSTGSPPVYVPTSR 86

  Fly    99 ------------------QYNHVAAHFGSAA---------AQNAWTTEGF--------GSAHAQ- 127
                              |.:|:..|.|.|.         |.:..|..||        |:|.|: 
 Frog    87 MPAMLQSLPYLQSCDTAHQGHHLGNHPGWAQTANESHTFNASSPHTPSGFPYSHSPPVGNASARE 151

  Fly   128 --FYSP------------NAAVMMGSWRSAYD-------PS---------------GFQRSSPYE 156
              :.||            |:.|..||:.|.|.       ||               |.|......
 Frog   152 GAYQSPLIMGSSARDQYGNSLVRTGSYPSPYSYVGADMPPSWATGHFEGSMLHSLQGRQPLPGRR 216

  Fly   157 SAMDF--QF-GEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLIKPSKRLVSATA 218
            |:::|  :| |||||||||||:||||||||||||||||||||||||||:|||||||.|||   ::
 Frog   217 SSLEFLEEFHGEGRECVNCGAMSTPLWRRDGTGHYLCNACGLYHKMNGINRPLIKPQKRL---SS 278

  Fly   219 TRRMGLCCTNCGTRTTTLWRRNNDGEPVCNACGLYYKLHGVNRPLAMRKDGIQTRKRKPKKTGSG 283
            :||.|||||||.|.||||||||::|||||||||||.|||||.|||||:|:.|||||||||....|
 Frog   279 SRRAGLCCTNCHTSTTTLWRRNSEGEPVCNACGLYMKLHGVPRPLAMKKESIQTRKRKPKNVSKG 343

  Fly   284 SAVGAGTGSGTGSTLEAIKECKEEHDLKPSLSLERHSLSKLH----TDMKSGTSSSSTLM-GHH 342
            . ...|:.|.|.|.......     |..|.|..|.:..|:..    ..:..|.|.:..|: |.|
 Frog   344 K-TSTGSTSATNSPSSVTNS-----DPTPVLKTEPNIASQYPGQAIVAVSQGQSQTDDLVNGSH 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pnrNP_476685.1 ZnF_GATA 164..212 CDD:214648 44/47 (94%)
ZnF_GATA 168..212 CDD:238123 40/43 (93%)
ZnF_GATA 223..270 CDD:214648 38/46 (83%)
ZnF_GATA 226..276 CDD:238123 40/49 (82%)
gata5XP_031749920.1 GATA-N 49..219 CDD:398818 36/169 (21%)
ZnF_GATA 231..275 CDD:238123 40/43 (93%)
ZnF_GATA 286..336 CDD:238123 40/49 (82%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 81 1.000 Domainoid score I8385
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 1 1.000 - - otm47735
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1091
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.000

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