DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pnr and gata2b

DIOPT Version :9

Sequence 1:NP_476685.1 Gene:pnr / 44849 FlyBaseID:FBgn0003117 Length:540 Species:Drosophila melanogaster
Sequence 2:XP_009300818.1 Gene:gata2b / 436962 ZFINID:ZDB-GENE-040718-440 Length:428 Species:Danio rerio


Alignment Length:332 Identity:126/332 - (37%)
Similarity:153/332 - (46%) Gaps:74/332 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 ILLSDGDSTSDQQSTRDYPHFSGDYQNVTLSAASA-----------------------STSASAS 44
            :.||..||..:     .|.|..|....::.|...|                       |.|..::
Zfish    54 VFLSHLDSQGN-----PYYHTHGSRARMSYSQTHARLTGGSMCRPHLINTHGLPLLDNSKSTFST 113

  Fly    45 ATHVAAVKMYHSSAVAAYTDLAAAGSAASAGVGVGVSG-----YHQQAVNAPVYVPSNRQYNHVA 104
            |.|..:..:.|......::..|.:.:...||.|...||     ...|..:|.:|.........|:
Zfish   114 AQHHGSWTVSHLGKAVLHSAGAESSNGLYAGTGAPASGPMPCLSMTQHCSAQLYCLPPTPPKDVS 178

  Fly   105 AHFGSAAAQNAWTTEGFGSAHAQFYSPNAAVMMGSWRSAYDPSGFQRSSPYESAMDFQFG----- 164
            .....||.::|      |..|...............||  :|...|.::|..|..|:...     
Zfish   179 PDPACAAVRDA------GKYHLHLVDGMKMECSSPIRS--NPHLAQTTTPIPSYPDYSVAGAHEY 235

  Fly   165 -------------------------EGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNR 204
                                     .|||||||||.||||||||||||||||||||||||||.||
Zfish   236 PASVFHSRNLLGNMTTKCKSKNRAFSGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNR 300

  Fly   205 PLIKPSKRLVSATATRRMGLCCTNCGTRTTTLWRRNNDGEPVCNACGLYYKLHGVNRPLAMRKDG 269
            |||:|.:||   :|:||.|.||.||.|.||||||||.:|||||||||||||||.|||||.|:|||
Zfish   301 PLIRPKRRL---SASRRAGTCCANCQTGTTTLWRRNANGEPVCNACGLYYKLHNVNRPLTMKKDG 362

  Fly   270 IQTRKRK 276
            ||||.||
Zfish   363 IQTRNRK 369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pnrNP_476685.1 ZnF_GATA 164..212 CDD:214648 41/77 (53%)
ZnF_GATA 168..212 CDD:238123 39/43 (91%)
ZnF_GATA 223..270 CDD:214648 37/46 (80%)
ZnF_GATA 226..276 CDD:238123 40/49 (82%)
gata2bXP_009300818.1 ZnF_GATA 261..308 CDD:214648 41/46 (89%)
ZnF_GATA 264..314 CDD:238123 42/52 (81%)
ZnF_GATA 314..363 CDD:214648 38/48 (79%)
ZnF_GATA 319..369 CDD:238123 40/49 (82%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_105861
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1745
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.740

Return to query results.
Submit another query.