DRSC/TRiP Functional Genomics Resources

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Protein Alignment pnr and gata2a

DIOPT Version :9

Sequence 1:NP_476685.1 Gene:pnr / 44849 FlyBaseID:FBgn0003117 Length:540 Species:Drosophila melanogaster
Sequence 2:XP_009304056.1 Gene:gata2a / 30480 ZFINID:ZDB-GENE-980526-260 Length:460 Species:Danio rerio


Alignment Length:464 Identity:148/464 - (31%)
Similarity:178/464 - (38%) Gaps:189/464 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 SAASASTSASASATHVAAVKMYH------------------SSAVAAYTDLAAAGSAASAGVGVG 79
            |:::|..|:..||||.:...:|:                  :|..|...:..:.....|...|:.
Zfish   134 SSSTAPVSSLTSATHSSPHPLYNFPPTPPKDVSPDPGPSSPTSTTARMDEKESIKYQVSIADGMK 198

  Fly    80 VSG----------------YHQQAVNAPVY-VPSNRQYNHVAAHFGSAAAQNAWTTEGFGSAHAQ 127
            :.|                .|......|.| :|:...|.....|.|:..:         |||   
Zfish   199 MEGCSPLRGSLAMSAQTPSTHHPIPTYPTYSLPAPHDYGGGLFHPGTLLS---------GSA--- 251

  Fly   128 FYSPNAAVMMGSWRSAYDPSGFQRSSPYESAMDFQFGEGRECVNCGAISTPLWRRDGTGHYLCNA 192
                          |::.|   :..|...|..:| ..||||||||||.|||||||||||||||||
Zfish   252 --------------SSFTP---KCKSKTRSCSEF-CTEGRECVNCGATSTPLWRRDGTGHYLCNA 298

  Fly   193 CGLYHKMNGMNRPLIKPSKRLVSATATRRMGLCCTNCGTRTTTLWRRNNDGEPVCNACGLYYKLH 257
            |||||||||.|||||||.:||   :|.||.|.||.||.|.||||||||.:|:|||||||||||||
Zfish   299 CGLYHKMNGQNRPLIKPKRRL---SAARRAGTCCANCQTTTTTLWRRNGNGDPVCNACGLYYKLH 360

  Fly   258 GVNRPLAMRKDGIQTRKRK-------PKKTGSGSAVGAGTGSGTGSTLEAIKECKEEHDLKPSLS 315
            .|||||.|:|:|||||.||       .|::|.|.                     ||        
Zfish   361 NVNRPLTMKKEGIQTRNRKMSSKSKRSKRSGEGF---------------------EE-------- 396

  Fly   316 LERHSLSKLHTDMKSGTSSSSTLMGHHSAQQQQQQQQQQQQQQQQQQQQSAHQQCFPLYGQTTTQ 380
                 |||...|..|...|:|.|..|                                       
Zfish   397 -----LSKCMQDKTSPFGSASALASH--------------------------------------- 417

  Fly   381 QQHQQHGHSMTSSSGQAHLSARHLHGAAGTQLYTPGSSSGGGSASAYTSHSAETPALSNGTP-SP 444
            ..|..|                          ..|.|.||         |...||     || .|
Zfish   418 MPHMGH--------------------------LPPFSHSG---------HMLPTP-----TPIHP 442

  Fly   445 HYQHHHHLG 453
            .:.|.||.|
Zfish   443 TFSHPHHSG 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pnrNP_476685.1 ZnF_GATA 164..212 CDD:214648 43/47 (91%)
ZnF_GATA 168..212 CDD:238123 40/43 (93%)
ZnF_GATA 223..270 CDD:214648 35/46 (76%)
ZnF_GATA 226..276 CDD:238123 38/49 (78%)
gata2aXP_009304056.1 ZnF_GATA 271..318 CDD:214648 43/46 (93%)
ZnF_GATA 274..324 CDD:238123 43/52 (83%)
ZnF_GATA 324..373 CDD:214648 36/48 (75%)
ZnF_GATA 329..377 CDD:238123 37/47 (79%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1745
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.840

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