DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pnr and Gata2

DIOPT Version :9

Sequence 1:NP_476685.1 Gene:pnr / 44849 FlyBaseID:FBgn0003117 Length:540 Species:Drosophila melanogaster
Sequence 2:NP_001342182.1 Gene:Gata2 / 14461 MGIID:95662 Length:480 Species:Mus musculus


Alignment Length:321 Identity:137/321 - (42%)
Similarity:165/321 - (51%) Gaps:51/321 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 SAASASTSASASATHVAAVKMYHSSAVAAYTDLAAAGSAASAGVGVGVS-GYHQQAVNAPVYVPS 96
            |.||.:.:|:.|.:|:..........|:.......|.|.||:..|..|: |..:..|...|.:..
Mouse   155 SVASLTPTAAHSGSHLFGFPPTPPKEVSPDPSTTGAASPASSSAGGSVARGEDKDGVKYQVSLSE 219

  Fly    97 NRQYNHVAAHFGSAAAQNAWTTEGFGSA-HAQF-----YSPNAAVMMGSWRSAYDPSGF-----Q 150
            :.:..      |.:..:....|.|...| |...     |.|.||...||  |.:.|.||     .
Mouse   220 SMKME------GGSPLRPGLATMGTQPATHHPIPTYPSYVPAAAHDYGS--SLFHPGGFLGGPAS 276

  Fly   151 RSSPYESAMDFQFGEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLIKPSKRLVS 215
            ..:|.:.:......||||||||||.:|||||||||||||||||||||||||.|||||||.:||  
Mouse   277 SFTPKQRSKARSCSEGRECVNCGATATPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRL-- 339

  Fly   216 ATATRRMGLCCTNCGTRTTTLWRRNNDGEPVCNACGLYYKLHGVNRPLAMRKDGIQTRKRKPKKT 280
             :|.||.|.||.||.|.||||||||.:|:|||||||||||||.|||||.|:|:|||||.||....
Mouse   340 -SAARRAGTCCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNVNRPLTMKKEGIQTRNRKMSSK 403

  Fly   281 GSGSAVGAGTGSGTGSTLEAIKECKEEHDLKPSLSLERHSLSKLHTDMKSGTSSSSTLMGH 341
            ...|..||              ||.||             |||...: ||...|::.|.||
Mouse   404 SKKSKKGA--------------ECFEE-------------LSKCMQE-KSPPFSAAALAGH 436

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pnrNP_476685.1 ZnF_GATA 164..212 CDD:214648 42/47 (89%)
ZnF_GATA 168..212 CDD:238123 39/43 (91%)
ZnF_GATA 223..270 CDD:214648 35/46 (76%)
ZnF_GATA 226..276 CDD:238123 38/49 (78%)
Gata2NP_001342182.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 166..208 10/41 (24%)
ZnF_GATA 294..344 CDD:238123 42/52 (81%)
ZnF_GATA 349..398 CDD:238123 38/48 (79%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 457..480
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1745
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.840

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