DRSC/TRiP Functional Genomics Resources

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Protein Alignment pnr and hdc

DIOPT Version :9

Sequence 1:NP_476685.1 Gene:pnr / 44849 FlyBaseID:FBgn0003117 Length:540 Species:Drosophila melanogaster
Sequence 2:XP_017947930.2 Gene:hdc / 100497702 XenbaseID:XB-GENE-979207 Length:672 Species:Xenopus tropicalis


Alignment Length:29 Identity:9/29 - (31%)
Similarity:17/29 - (58%) Gaps:0/29 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 GILLSDGDSTSDQQSTRDYPHFSGDYQNV 30
            |.::|...:|||.::|.:..:...|.:||
 Frog   506 GPVISSNPTTSDNKNTLNIGNTKCDQENV 534

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pnrNP_476685.1 ZnF_GATA 164..212 CDD:214648
ZnF_GATA 168..212 CDD:238123
ZnF_GATA 223..270 CDD:214648
ZnF_GATA 226..276 CDD:238123
hdcXP_017947930.2 Pyridoxal_deC 62..440 CDD:395219
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1745
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.030

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