DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mud and clip1a

DIOPT Version :9

Sequence 1:NP_727769.3 Gene:mud / 44839 FlyBaseID:FBgn0002873 Length:2567 Species:Drosophila melanogaster
Sequence 2:XP_009300267.1 Gene:clip1a / 797680 ZFINID:ZDB-GENE-060526-282 Length:1569 Species:Danio rerio


Alignment Length:1682 Identity:370/1682 - (21%)
Similarity:658/1682 - (39%) Gaps:472/1682 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 SDLDSFFSVFIQKIQETENV-KGKNELQDQPTEQSPLVQEFLAHNYPEFIAQQD-------DKEV 86
            |||....|..:..:.|:.:| ||:.||:   .....||....| ....|:.:.|       ..|:
Zfish   164 SDLVRSKSESVSNLSESGSVKKGERELK---INDRVLVAGSKA-GVVRFLGETDFAKGEWCGVEL 224

  Fly    87 DLPL---DCLYVYTLLLHYSCVKKPSLF--FHNICN-KLPELTQTCIASFFRETVDRLLTREYLS 145
            |.||   |.....|  .::.|..|..||  .|.:.. ..|..|.....:..|:|.          
Zfish   225 DEPLGKNDGAVAGT--RYFQCQPKYGLFAPVHKVTRIGFPSTTPAKAKTTVRKTT---------- 277

  Fly   146 QAIANVAVVYRQGVSTSVSPCLPSSSLSPDPRSDDAPCPSTPSSSSSQPSSSTPQLRNHREQLRL 210
                         .:|:.:|    |:|...|.:......|:.:||:|...|.|..|         
Zfish   278 -------------ATTAATP----SALKRSPSASSISSMSSVASSASCKPSRTGLL--------- 316

  Fly   211 NGCEMPPPSTPKTELLEQRTKELRGIRTQLEVVRYEKALLEEQQMEKDELIKVLNKEKMMAKMEL 275
                        ||...:.::::.|      ....::||.|:||          :.|:::|:.:|
Zfish   317 ------------TETSTRYSRKISG------TTALQEALKEKQQ----------HIEQLLAERDL 353

  Fly   276 EKLRNVKLTEEHHDNESHHIMPYEFEHMKGCLLKEIGLKESLIAEITDKLHDLRVENSELSEKLN 340
            |:....|.|        :|:...|.|.   .||:| | :|...:|:.||:..||.          
Zfish   354 ERAEVAKAT--------NHVGEVEQEL---TLLRE-G-QEQYASEVNDKMDQLRA---------- 395

  Fly   341 LAGKRLLEYTDRIRFLESRVDDLTRIVSSRDVMISSLESDKQELDKCLKEARDDLHNRIEVLNAS 405
                 |:|..||     .:|:           :::.||.:|:::        :||..|:|....:
Zfish   396 -----LVEAADR-----EKVE-----------LLNQLEEEKRKV--------EDLQFRVEEACIT 431

  Fly   406 SDLLDCSLSPNTTPENLASSVIDKQLREKEHENAELKEKLLNLNNSQRELCQALSSFLQKHNIDH 470
            ...|:       |...|..:::      ||.|.:.|.|| ......||||               
Zfish   432 KGDLE-------TQTQLEHALL------KELEQSLLFEK-TKAEKLQREL--------------- 467

  Fly   471 EFPVEWTSSSLLSTISAIESKFVNTLEKSTQMKKECDVQSVCVEKLLEKCKLLSVSLGCQPKELD 535
                   ..|.::|:|  |...:..||:...||   |.:|..:.|.||       :|..|....|
Zfish   468 -------EDSRVATVS--EKSRILELERDLSMK---DKESAALRKSLE-------ALSSQDGVCD 513

  Fly   536 GFEATIPEAMESGFESSRECETILSCCHMKVVDIASKNNDLELDNERLNDKCAELKSIIDRGDQH 600
            ...|.:.|.:  ....|::.|.    .|....:::|....||...:...:....|::...|    
Zfish   514 SAVAALQEQL--SLIRSQQAEQ----SHSHQAELSSMREKLEAQEKAHREALMHLQASSSR---- 568

  Fly   601 LADINLQLIEKEKQIKDVGAEIQELRKRNINLENMLSQIADKEASA-ASHAQHLKQCGELLRAKY 664
            |:..|.||:          ||:.:.::.|   .|::.|.:||..|. |||.|.|::    |:...
Zfish   569 LSKDNEQLL----------AELAKSKEEN---SNVVEQWSDKLKSVEASHQQALEE----LKTSR 616

  Fly   665 EVCRNELIAKNAAQDELVRMMMVPDGETLNGRVRQLIDLEMMHDEHNKMYAQMLKQLNELSAKH- 728
            |..:.||      .|.|.|                   |:..|    |:      :|.||:.|| 
Zfish   617 EASKAEL------SDALER-------------------LKSTH----KL------ELEELAKKHS 646

  Fly   729 --------DNMTHSHLDFVKRTEIELETKNAQIMAFDEHNNHFDRFLTRIFTLLRSRNCPKSTTM 785
                    :.|.|                .||::...|.|.       |...:|||         
Zfish   647 SEAAGWVGEGMEH----------------KAQLLKVAEENE-------RQVEMLRS--------- 679

  Fly   786 GSATNFLESMHIEKRFENIEMLIE-----GQLLSADDLKRELDDLRSKNEELAKQNINGIIKRNK 845
                      .:||..|  :.|:|     |:|.:|:...:||:|...|..|..|:.:...:::::
Zfish   680 ----------SLEKAEE--QHLVELEDAMGKLHAAELRVKELEDSGVKISEQLKEKVQEALEQSE 732

  Fly   846 FITSLEV----NTEKVKQYITDLEE---EAFKRKQKVVQLENTLSKEQSNAKEMAQRLDIAQQEI 903
            .:.||:.    ..:::::.::.:||   :|..:::||.:|.:.|..:|.....:.|.....:||:
Zfish   733 ALQSLQTQHSQGNQEMQRLLSQVEEAKSKARSQEEKVTELNSVLEVKQQELSGLLQEKSSLEQEV 797

  Fly   904 KDYHVEAIRFINTIRDRLQQDFNGVNTPQQLGTCMTEFLKMYDQMEVRYEESSSLVEKLTESQAK 968
                           ..|:|:                                  :||.|..|||
Zfish   798 ---------------SLLKQN----------------------------------LEKTTNDQAK 813

  Fly   969 LEMQVAELQVELENKDTNQHSGALIKQLNDTIQNLEKV--NAKLSEDNTVSHTV-HSKLNESLLK 1030
            ......|||.||.||:....|  |..:|.||...|..:  :.|.||:..:..|. .:||...::.
Zfish   814 SSQTNQELQEELRNKEDKCTS--LSAELQDTKSQLAGLQRSLKASEERCLLLTKDKTKLENDIMD 876

  Fly  1031 AQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKE----------------- 1078
            ..|.....:.:|..|  :|.| ..|...|::|:.:|:...||.||.:|                 
Zfish   877 MTKSSGDSSTLITKL--NEEN-KRKEGRLEELQKQLEEEREKTAQTEEKLSHTRVQTENEAKSLM 938

  Fly  1079 --------TYEEQIKALQAKCDMEAKKNEHLERNQNQSLTQLKEDALENCVLMSTKLEELQAKLQ 1135
                    ..:|:||.|:...:....|.:.|..:..::||    ||.|   |.|.:.:|||:|.:
Zfish   939 QKHQAELANLQEKIKLLEKSIEDNHAKAKDLHASGEKALT----DAAE---LHSKEKQELQSKYE 996

  Fly  1136 EGQQLV---DSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKEL 1197
            :.||.:   .::.|||....:||...|.......|..:..:...|...|  |||:::.:|...| 
Zfish   997 KVQQELSASQNESLELRKQIEELMTFKEKTAVLEKAEEAARASLEKMTQ--DNLQLQKDKSDSE- 1058

  Fly  1198 AHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVE---LEKERKELAQVKSVIEAQTKLSDDLQRE 1259
            |.|.:......::...|:..|:...|..::|..:   :....||:..:|..:..:::..|||:.|
Zfish  1059 AQVTALRNTVQEMQSKLDALKQQNTQYEESLSSDGQRISSLSKEIEDLKQAVAEKSQAVDDLKNE 1123

  Fly  1260 KESA----------QQLVDNLKVELDKERKELAQVNSAFEAQTKLS---DDLQRQKESAQQLVDN 1311
            ||..          ..::.|||.|.|:..::|.      ||:|:.|   .:.:::|.:.||.:..
Zfish  1124 KEKLVVDLANSHKDSNIILNLKKECDRLNEQLK------EAKTRESSFRSESEKEKAALQQTLQT 1182

  Fly  1312 LKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQT 1376
            ....:.::.|||..:.:..:|..:.:...|....|..:.:::|.       ||:.::|.....::
Zfish  1183 QSGLVSEKDKELNSLRNELDALKQQNSQYQESLSSDSERINSLS-------KEIEELKQAAVEKS 1240

  Fly  1377 KLSDDLQRQKES-----AQQLVD-----NLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESA 1431
            :..|||:.:||.     |..|.|     |||.|.|....:|.::|   :.::.|:.:.:::|.:.
Zfish  1241 QAVDDLKNEKEKLTMDLANSLKDSNILLNLKKECDNLNDQLKELK---KRESTLTSESEKEKAAL 1302

  Fly  1432 QQ-LEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKEL-AQVKSVIEAQTKLSDDLQRQKESAQ 1494
            || |:.|:.|..  ::.||     :|:::.||.|||..| :|:|.:...::.|:.:.:::|.:.|
Zfish  1303 QQSLQTQSALIS--EKDKE-----LDSVRNELKKERDSLNSQLKKMEMRESTLTKETEKEKAALQ 1360

  Fly  1495 QLVDNLKMELDKERKELAQVKSAIGA---QTK-LSDDLECQKESVQQLVDNLKVELEKERKELAK 1555
            |.:......:.::.|||..:::.:|.   ||: |...|:.||....||.:.|| .||:...: |:
Zfish  1361 QSLQTQSALISEKDKELDSMRNEMGGLRDQTQTLQSSLKSQKSENIQLQERLK-GLERSLAD-AQ 1423

  Fly  1556 VNSAFEAQTKLSDDLKLQ-----KEDAQREVFLVKERLVKEKREFEVKLATLEDIIE 1607
            :.|..:   ..|||..|:     ||:|:.:|..:...:|:.:|:.|...:.||.:.|
Zfish  1424 IPSKGD---NASDDSALRMWKEAKENAEHQVEFLNSVIVELQRKNEDLKSKLEKMAE 1477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mudNP_727769.3 SMC_prok_B 319..1178 CDD:274008 192/911 (21%)
SCP-1 853..1571 CDD:114219 181/783 (23%)
Smc 1234..>1944 CDD:224117 101/408 (25%)
DUF948 1392..1517 CDD:295114 34/131 (26%)
clip1aXP_009300267.1 CAP_GLY 55..118 CDD:279625
CAP_GLY 193..256 CDD:279625 16/65 (25%)
Smc <333..1004 CDD:224117 204/947 (22%)
SCP-1 709..1402 CDD:114219 175/779 (22%)
COG7 720..>871 CDD:287200 40/201 (20%)
SPEC 940..1119 CDD:295325 42/188 (22%)
GluZincin 1227..>1365 CDD:301352 40/147 (27%)
CLIP1_ZNF 1507..1524 CDD:293247
CLIP1_ZNF 1547..1563 CDD:293247
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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