DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mud and Golga4

DIOPT Version :9

Sequence 1:NP_727769.3 Gene:mud / 44839 FlyBaseID:FBgn0002873 Length:2567 Species:Drosophila melanogaster
Sequence 2:XP_036010996.1 Gene:Golga4 / 54214 MGIID:1859646 Length:2280 Species:Mus musculus


Alignment Length:2407 Identity:507/2407 - (21%)
Similarity:947/2407 - (39%) Gaps:587/2407 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 PELTQTCIASFFRETVDRLLTREYLSQAIANVAVVYRQ---GVSTSVSPCLPSSSL--------S 173
            |..|::..:||..:..|....||.|:..:|..|.:...   .:.:|..|...:.|:        |
Mouse    32 PTRTRSRTSSFTDQLDDVTPNRELLAGMVAEPAFLSEYTIFALDSSKQPKTQTGSVNASTQATKS 96

  Fly   174 PDPRSDDAPCPS------------------------TPSSSSSQPSSSTPQLR-NHREQLR---- 209
            ||..|.|...||                        :|...|...||..|.:| :.||.|.    
Mouse    97 PDGVSKDESSPSQSGDTQTFAQKLQLRVPSMESLFRSPIKESLFRSSKEPLVRTSSRESLNQLDL 161

  Fly   210 -LNGCEMPPPSTPKTEL-----------LEQRTKELRGIRTQLEVVR--YEKALLEEQ--QMEKD 258
             .:.....|||..::|.           .||..:.||.:...|...|  |.:.:...|  |.||.
Mouse   162 DCSAAAFDPPSDMESEAEDAPWNSDGLSREQLLQRLRRMERSLSSYRGKYSELVTAFQTLQREKK 226

  Fly   259 ELIKVLNKEKMMAKMELEKLRNVKLTEEHHDNESHHIMPYEFEHMKGCLLKE---IGLKESLIAE 320
            :|..:|::.:..:...:.:||.    |...|.::...:..||:   .||.::   |.:.::.::.
Mouse   227 KLQGILSQSQDKSLRRISELRE----ELQMDQQAKKHLQDEFD---ACLEEKDQYISVLQTQVSL 284

  Fly   321 ITDKLH---------------DLRVENSELSEKLNLAG---------KRLLEYTDRIRFLESRVD 361
            :..:|.               :|:.|....:||:...|         |.|.....|::..|:.:.
Mouse   285 LKQRLQNGPMNVDAPKPLPPGELQAEVHGDTEKMEGVGEPVGGGTSAKTLEMLQQRVKRQENLLQ 349

  Fly   362 DLTRIVSSRDVMISSLESDKQELDKCLKEARDDLHNRIEVLNASSDLLDCSLSPNTTPENLASS- 425
            .....:.|.....:.|.|:|:.|.:.|.|...:|....|:..|....|...|   ...:||... 
Mouse   350 RCKETIGSHKEQCALLLSEKEALQEQLDERLQELEKMKELHMAEKTKLITQL---RDAKNLIEQL 411

  Fly   426 ------VIDKQLRE-------KEHENAELKEKLLNLNNSQRELCQALSSFLQKHNIDHE--FPVE 475
                  ||.:..|:       ||.|.|:|:..:..:.....||.:      ||...:..  :..:
Mouse   412 EQDKGMVITETKRQMLETLELKEDEIAQLRSHIKQMTTQGEELRE------QKEKSERAALYEQD 470

  Fly   476 WTSSSLLSTISAIESKFVNTLEKSTQMKKECDVQSVCVEKLLEKCKL-LSVSLGCQPKELDGFEA 539
            |....|...:|..:    .|.:...:||.|.|.|...||:..|:.:| |...|          ..
Mouse   471 WAFEELEKALSTAQ----KTEDAQRRMKMEMDEQMKAVERASEEERLRLQHEL----------SR 521

  Fly   540 TIPEAMESGFESSRECETILSCCHMKVVDIASKNNDL---------ELDNE---RLNDKCAELKS 592
            ...||.....::|.|....|...|.:  ::|||..:|         ||..:   .|....:|...
Mouse   522 VRQEAASMAKKNSEEQVAALQKLHAE--ELASKEQELSRRLEARERELQEQMRIALEKSRSEYLK 584

  Fly   593 IIDRGDQH----LADINLQ----LIEKEKQIKDVGAEIQELRKRNINLENMLSQIADKEASAASH 649
            :....:|.    |.::.||    |.|.|.:::::|.|.:..|.|.:.||..|.:...:..:.:.|
Mouse   585 LTQEKEQQESLALEELELQKKAILTESENKLQELGQEAEAYRTRILELETSLEKSLQESKTQSEH 649

  Fly   650 -AQHLK----QCGELLRAKYEVCRNELIAKNAAQDELVRMMMVPDGETLNGRVRQLIDLEMMH-- 707
             |.||:    :..:.|.|..|..|.|:......||.|              ...:|..|...|  
Mouse   650 LAVHLEAEKNKHNKELTALAEQHRTEVEGLQQQQDSL--------------WTERLQSLSQQHQA 700

  Fly   708 --DEHNKMYAQ----MLKQLNELSAKH-DNMTHSHLDFVKRTEIELET----------------- 748
              :|..:.|.|    :||:...|...| .:|....|:.:.:.::|||:                 
Mouse   701 AVEELREKYQQEKDALLKEKESLFQAHIQDMNEKTLEKLDKKQMELESVSSELSEALRARDQLAE 765

  Fly   749 ------------KNAQIMAFDEHNNHFDRFLTRI-----FTLLRSRNCPKS--TTMGSATNFLES 794
                        |.|.....:|...|..|.:..|     .|:.|:....|.  :.:|:..:..:.
Mouse   766 ELSVLRGDADKMKQALEAELEEQRRHHQREVGSISEQQELTVRRAEKALKDELSRLGALLDERDE 830

  Fly   795 MHIEKRFENIEMLIEGQLLSADDLKR---ELDDLRSK-----------NEELA--KQNINGIIKR 843
             |:.:|...::.|......||.:|::   :||.|.|:           .|:||  :|.:..:...
Mouse   831 -HLRERQARVQDLEAHLQKSAGELQQALAKLDLLHSEQSAAREQAGAYEEQLAQMQQKVLDLETE 894

  Fly   844 NKFITSLEVNTEKVKQYITDLEEEAFKRKQKVVQLENTLSKEQSNAKEMAQRLD-------IAQQ 901
            ...:|...|..|..|:::.   ||...::.:|.|||...|:.:...:.:||..|       :.::
Mouse   895 KSLLTKQVVEMETHKKHVC---EELDAQRAQVQQLERQRSELEEKVRSLAQLQDSQLKNSTVEKE 956

  Fly   902 EIKDYHVEAIRFINTIRDR-------LQQDFNGVNTPQQLGTCMTEFLKMYDQMEVRYEESSSLV 959
            :.:...:|....|..:|:.       |:|..:  :..:.:.....|:...:...|.|.|:.....
Mouse   957 QARQSLMEKENIILQMREEQAKEIEILKQTLS--SKEESISILHEEYETKFKNQEKRMEKIKQKA 1019

  Fly   960 EKLTESQAKLEMQVAELQVELEN------KDTNQHSGALIKQ-------LNDTIQNLEKVNAKLS 1011
            :::.|::.||..|.|:|:.||||      :...|.:..:::.       ::||:..||:...:..
Mouse  1020 KEMQETKKKLLDQEAKLKKELENTVLELSQKEKQFNAQILEMAQANSAGISDTVSRLEENQRQQI 1084

  Fly  1012 EDNTVSHTVHSKLNESLLKAQKEL-----DLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDE 1071
            |..|.:|  ..||::.:...:|:|     :||.|..|.:|..|:.|.....:::.::::.:...:
Mouse  1085 ESLTGAH--QRKLDDVIEAWEKKLSQQAAELRDKHAEQMEEKEQGLGELRQKVRIVQSEKEELTK 1147

  Fly  1072 KIAQIKETYEEQ---IKALQAKCDMEAKKNEHLERNQNQSLTQL-KEDALENCVLMSTKLEELQA 1132
            ::|::||....|   :..||.:.:.::.....|...::|..:|: |.:|...|.| |.|| .||.
Mouse  1148 EVARLKEAVSGQDVALAGLQGQLEQKSAVIVSLSERESQLQSQVEKLEADLGCSL-SEKL-SLQE 1210

  Fly  1133 KLQEGQQLVDSQKL-------ELDMNRKELALVKSAYEAQTK-LSDDLQRQKESGQQLVDNLKVE 1189
            :|.|.:.|.|..:|       ::....|||...||.:|...| |.|.....|...::|...|...
Mouse  1211 ELAELKLLADKSQLRVSELTGQVQAAEKELQSCKSLHELSKKSLEDKSLNLKSLLEELASQLDSR 1275

  Fly  1190 LEKERKEL-AHVNSAIGAQTKLSDDL-----ECQKES---GQQLVDNLKVELEKERKELAQVKSV 1245
            .|:.:..| |..|..:......:|.:     :||:.:   |:.|:           :.:.|| |.
Mouse  1276 CERTKALLEAKTNELVCTSRDKADAILARLSQCQRHTATVGEALL-----------RRMGQV-SE 1328

  Fly  1246 IEAQ-TKLSDDLQREKESAQQLVDNLKVELDKERKEL-AQVNSAFEAQTKLSDDLQRQKESA--- 1305
            :||| |:|:::.:..|.|.||:.:.|: |.:|:.|.: |.:......:..|..:..:|:::|   
Mouse  1329 LEAQLTQLTEEQRTLKSSFQQVTNQLE-EKEKQIKTMKADIEGLLTEKEALQQEGGQQRQAASEK 1392

  Fly  1306 QQLVDNLKVELDKE-------RKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKV--ELDKE 1361
            :..:..||.||.:.       |:||::..|...:.:|...||..:.||:....|..:.  .|.|:
Mouse  1393 ESCITQLKKELAENINAVTLLREELSEKKSEIASLSKQLSDLGAQLESSISPSDKAEAISALSKQ 1457

  Fly  1362 RKEL-AQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKE----LAKVKSVIEAQTKLS 1421
            .:|. .|:::.::..:...|.|.::|.||.:.||:...:..:.:|:    ||:.:|.|:      
Mouse  1458 HEEQELQLQAQLQELSLKVDALSKEKMSALEQVDHWSNKFSEWKKKAQSRLAQHQSTIK------ 1516

  Fly  1422 DDLQRQKE----SAQQLEAQ-TKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQT- 1480
             |||.|.:    .|::.|.| ..|.:||.||.:..:.|...::|...|..|:...:::.::.|| 
Mouse  1517 -DLQAQLDVKATDAREKEEQICLLKEDLDRQNKKFECLKGEMEVRKSKMEKKECDLETALKTQTA 1580

  Fly  1481 ---KLSDDLQRQKESAQQLVDNLK---MELDKERKELAQVKSAIGAQTKLSDD-LECQKESVQQL 1538
               :|.|.:.::|:..:.|.:.||   .:.|.|...|.|....:....:..|: :...:|:|.:|
Mouse  1581 RVVELEDCVTQRKKEVESLNETLKNYNQQRDTEHSGLVQRLQHLEELGEEKDNKVREAEETVLRL 1645

  Fly  1539 ---VDNLKVELEKERKELAKVNSAFEAQ----TKLSDDLKLQ-------KEDAQREVFLVKERL- 1588
               |.:|:.||...:|||..|||:.:::    ..|.|.|:|:       |..|::::..::::| 
Mouse  1646 REHVSSLEAELGTVKKELEHVNSSVKSRDGELKALEDKLELESAAKVELKRKAEQKIAAIRKQLL 1710

  Fly  1589 --VKEK-------------------REFEVKLATLEDIIETLE----------MRCTQM-----E 1617
              ::||                   :|.|.::.:|||.::.||          .|..|.     |
Mouse  1711 SQMEEKTQRYAKDTENRLSELSAQLKEREKQVHSLEDKLKNLESSPHPEVPAVSRSMQSVAASPE 1775

  Fly  1618 EE--------RATAYEQINKLENRCQEKD----NVKSSQLQVETFKVECLHHQLKSEM-ATHNSL 1669
            :|        .....|::..|:.|..||:    .::..:.:....:.|..|..|..:: .|....
Mouse  1776 QEAPDSQDCTHKACKERLCMLQRRLSEKEKLLRRLEQGEGEARPSQPEAQHRALSGKLDCTRARQ 1840

  Fly  1670 VED------LNRKLAEKVSKLDFVQSRLMTEIAEHNQ-VKDQLAQITDIPKVVELQHRLEAETAE 1727
            :||      |..:|.||: |...:.|:.|.|...:|. ||...|.:.|..:....:..|..:..|
Mouse  1841 LEDHVLIGCLPEELEEKM-KCSLIVSQPMGEETGNNTGVKQNWASVVDSVQKTLQEKELTCQALE 1904

  Fly  1728 REEAQNKLAVVTGRLDEITRELDNARLEHGAQILRM-------EETAREVGNKNAELCELIEFYR 1785
            :            |:.|:..:|...|..|..::.::       :.:.:|:..:|    :.:|...
Mouse  1905 Q------------RVKELESDLVRERGAHRLEVEKLTLKYEKSQSSQQEMDGEN----KCVEVLE 1953

  Fly  1786 NRVEALERLLLASNQELEELNSIQSN--QAEGVRDLGDTYSAAEGRQTESDQDKERYQK----LA 1844
            :|.|           |..:.:.||||  ..:|:|      |..|.:.|.:::||::..|    |.
Mouse  1954 DRPE-----------ENSQSHEIQSNVGTVDGLR------SDLESKLTGAERDKQKLSKEVARLQ 2001

  Fly  1845 LDCKILQAKYRDAKDEIKR-----CEKKIKDQRLEMEGK-LEKMKNKMRSLYT--AEVTRMKEKQ 1901
            .:.:.|:.:::...|.:||     .|:|:|.::.::|.| ...:|..||...|  |:..:..|:.
Mouse  2002 KELRALRREHQQELDILKRECEQEAEEKLKQEQEDLELKHTSTLKQLMREFNTQLAQKEQELERT 2066

  Fly  1902 ERDAAKSASELEALTAQNAKYEEHTRKLSNQI----------VRLNEKILEQQKQHAI-----IS 1951
            .::....|.|:||...::  ::|.|::|..:|          .|..|:||:.:::...     :.
Mouse  2067 VQETIDKAQEVEAELLES--HQEETQQLHRKIAEKEDDLRRTARRYEEILDAREEEMTGKVTDLQ 2129

  Fly  1952 TNLRHLQ------MQPISETKPSSTTLTVSSSSSAPNDDWQPFKRPNVPSSNLAMEDEEGEVFNN 2010
            |.|..||      ::....||.|.|.|.:                    .:.||.:        .
Mouse  2130 TQLEELQKKYQQRLEQEESTKDSVTILEL--------------------QTQLAQK--------T 2166

  Fly  2011 TYLTDLKLGRVPADMTAEELIYRNSLQPPHLKSTYAAQYDLGSQDEDLKDGPHSLDDSMSALLSS 2075
            |.::|.||                                   ::::|::..|:|:|.:.....:
Mouse  2167 TLISDSKL-----------------------------------KEQELREQVHNLEDRLKRYEKN 2196

  Fly  2076 SSTGTRKKSMGTHYKRPGPPTPSKNGGRL------SFGSSEPP-----REILREFGDHNNTSKTP 2129
            :...|    :||.||          ||.|      .||  ||.     |:::.|:.....| ||.
Mouse  2197 ACAAT----VGTPYK----------GGNLYHTEVSLFG--EPTEFEYLRKVMFEYMMGRET-KTM 2244

  Fly  2130 AR 2131
            |:
Mouse  2245 AK 2246

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mudNP_727769.3 SMC_prok_B 319..1178 CDD:274008 215/1029 (21%)
SCP-1 853..1571 CDD:114219 188/809 (23%)
Smc 1234..>1944 CDD:224117 189/843 (22%)
DUF948 1392..1517 CDD:295114 35/140 (25%)
Golga4XP_036010996.1 SMC_prok_B 197..1046 CDD:274008 183/900 (20%)
Smc 733..1532 CDD:224117 179/828 (22%)
Smc <1501..2188 CDD:224117 162/792 (20%)
Grip 2222..2265 CDD:197860 7/26 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.