DRSC/TRiP Functional Genomics Resources

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Protein Alignment mud and Golga3

DIOPT Version :10

Sequence 1:NP_727769.3 Gene:mud / 44839 FlyBaseID:FBgn0002873 Length:2567 Species:Drosophila melanogaster
Sequence 2:NP_001334318.1 Gene:Golga3 / 269682 MGIID:96958 Length:1487 Species:Mus musculus


Alignment Length:1690 Identity:361/1690 - (21%)
Similarity:650/1690 - (38%) Gaps:447/1690 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   160 STSVSPC----LPSSSLSPDPRSDDAPCPSTPSSS-----------SSQPSSSTPQLRNHR-EQL 208
            |:.|:.|    :|...||.||.:.    |..|.:|           :||.:|:...:|... :.|
Mouse    64 SSQVAICQNGQIPDLQLSLDPTTS----PVGPDASTGVDGFHDNLRNSQGTSAEGSVRKEALQSL 124

  Fly   209 RLNGCEMPPPSTPKTELLEQRTKELRGIRTQLEVVRYEKALLEEQQME---------------KD 258
            ||        |.|..|.....|.....:..:.:|....:..||||.|:               |.
Mouse   125 RL--------SLPMQETQLCSTASSLPLEKEEQVRLQARKRLEEQLMQYRVKRHRERSSQPATKM 181

  Fly   259 ELIKVLNKEKMMAKMELEKLRNVKLTEEHHDNESHHIMPYEFEHM---KGCLLKEIGLKESLIAE 320
            :|...|:.|.|:....|.:...|.:|:|           |.|...   :|..:..:||       
Mouse   182 KLFSTLDPELMLNPENLPRASTVAVTKE-----------YSFLRTSVPRGPKVGSLGL------- 228

  Fly   321 ITDKLHDLRVENSELSEKLNLAGKRLLEYTDRIRFLESRVDDLTRIVSSRDVMISSLESDKQELD 385
               ..|....:||:.|:..:||..|..:.:|.           ..:.|:.|.:.|||:..:....
Mouse   229 ---LAHSKEKKNSKSSKIRSLADYRTEDPSDS-----------GGLGSTADAVGSSLKQSRSSTS 279

  Fly   386 KCLK-EARDDLHNRIEVLNASSDLL---DCSLSPNTTPENLASS----------------VIDKQ 430
            ...: ....:..||:|..:.:.|.:   |.:.|.:::..:|::.                ::|.|
Mouse   280 VVSEVSPSSETDNRVESASMTGDSVSEADGNESDSSSHSSLSARGACGVLGNVGMPGTAYMVDGQ 344

  Fly   431 LREKEHENAELKEKLLNLNNSQRELCQALSSFLQKHNIDHEFPVEWTSSSLLSTISAIESKFVNT 495
                     |:..:.|....|.:::.||.::..|..|.:....|.....|:.|::| :||.....
Mouse   345 ---------EISAEALGQFPSIKDVLQAAAAQHQDQNQEANGEVRSRRDSICSSVS-MESSLAEP 399

  Fly   496 LEKSTQMKK-----ECDVQSVCVE---KLLEKCKL------LSVSLGCQ-------PKELDGFEA 539
            .::..|:.|     |..|:::.:|   .|.||.:|      ||..|..|       .::.|...:
Mouse   400 QDELLQILKDKRRLEGQVEALSLEASQALQEKAELQAQLAALSTRLQAQVEHSHSSQQKQDSLSS 464

  Fly   540 TIPEAMESGFESSRECETILSCCHMKVVDIASKNNDLELDNE---RLNDKCAELKSIIDRGDQHL 601
            .:....:|.::..|....:.|....|...:||.||||::..|   ||..|..:::..|...|..:
Mouse   465 EVDTLKQSCWDLERAMTDLQSMLEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRNILSKDNTV 529

  Fly   602 ADINLQLIEKEKQIKDVGAEIQELRKRNINLENMLSQIADKEASAASHAQHLKQCGELLRAKYEV 666
            .|:..|:...:.|::.|..|...|..:        .|.:..|.::..||:...|           
Mouse   530 HDLRQQMTALQSQLQQVQLERTTLTSK--------LQASQAEITSLQHARQWYQ----------- 575

  Fly   667 CRNELIAKNAAQDELVRMMMVPDGETLNGRVRQLIDLEMMHDEHNKMYAQMLKQLNELSAKHDNM 731
              .:|   ..||:..||:    .||..:.:|.|:....::  ||.|        |..:|..|...
Mouse   576 --QQL---TLAQEARVRL----QGEMAHIQVGQMTQAGLL--EHLK--------LENVSLSHQLT 621

  Fly   732 THSHLDFVKRTEIELETKNAQIMAFDEHNNHFDRFLTRIFTLLRSRNCPKSTTMGSATNFLESMH 796
            ...|....::..|.::.::.:....|:                                      
Mouse   622 ETQHRSIKEKERIAVQLQSIEADMLDQ-------------------------------------- 648

  Fly   797 IEKRFENIEMLIEGQLLSADDLKRELDDLRSKNEELAKQNINGIIKRNKFITSLEVNTEKVKQYI 861
             |..|..|.   |.:.:..:||:|.|::...:.|:|.|.        .....|||...|:||..:
Mouse   649 -EAAFVQIR---EAKTMVEEDLQRRLEEFEGEREQLQKV--------ADAAASLEQQLEQVKLTL 701

  Fly   862 TDLEEEAFKRKQKVVQLEN---------TLSKEQSNAK------------EMAQRLDIAQQEIKD 905
                   |:|.|::..|:.         |.::|...||            |:..||:..|:| .|
Mouse   702 -------FQRDQQLAALQQEHLDVIKQLTSTQEALQAKGQSLDDLHTRYDELQARLEELQRE-AD 758

  Fly   906 YHVEAIRFINTIRDRLQQDFNGVNTPQQLGTCMTEFLKMYDQMEVRYEESSSLVEKLTESQAKLE 970
            ...:||.|:...:..|:.......:.::      |..:...::|...||:|.|:|:|.:..|...
Mouse   759 SREDAIHFLQNEKIVLEVALQSAKSDKE------ELDRGARRLEEDTEETSGLLEQLRQDLAVKS 817

  Fly   971 MQVAELQ-----------------------VELENKDTNQHS------GALIKQLNDTIQNLEKV 1006
            .||..||                       ||...:|.....      .|..|:|:..::.|.:.
Mouse   818 NQVEHLQQETATLRKQMQKVKEQFVQQKVMVEAYRRDATSKDQLINELKATKKRLDSEMKELRQE 882

  Fly  1007 NAKLSEDNTVSHTVHSKLNESLLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDE 1071
            ..||..:.......||:|       ||::.|..:.:..||...:::..:..|::.....||...|
Mouse   883 LIKLQGEKKTVEVEHSRL-------QKDMSLVHQQMAELEGHLQSVQKERDEMEIHLQSLKFDKE 940

  Fly  1072 K---IAQIKETYEEQIKALQAKCDMEAKK-----NEHLER-----NQNQSLTQLKEDALENCV-L 1122
            :   :.:..||.::||:.||    .||||     .:.::|     :..|...:.|..|.||.| :
Mouse   941 QMIALTEANETLKKQIEELQ----QEAKKAITEQKQKMKRLGSDLSSAQKEMKTKHKAYENAVSI 1001

  Fly  1123 MSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTK--LSDDLQRQK----ESGQQ 1181
            :|.:|:|         .|...:..:.::|:         ..||:.  .||.:..:|    |...|
Mouse  1002 LSRRLQE---------ALASKEATDAELNQ---------LRAQSTGGSSDPVLHEKIRALEVELQ 1048

  Fly  1182 LVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVI 1246
            .|...|:.||||.:|:.         |..|.:||..:|...:|.|    ||::.|....::|.:.
Mouse  1049 NVGQSKILLEKELQEVI---------TMTSQELEESREKVLELED----ELQESRGFRRKIKRLE 1100

  Fly  1247 EAQTKLSDDLQREK-------ESAQQLVDN---LKVELDKERKELAQVNSAFEAQTKLSDDLQRQ 1301
            |:..||:.:|:.|:       :|...|.::   |:..|.|...:|.|:|...:|..:..::..||
Mouse  1101 ESNKKLALELEHERGKLTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQ 1165

  Fly  1302 KESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERK--- 1363
               .:|||..|:|.|:||:.|   |||           |:.:..:|       ::|....|:   
Mouse  1166 ---MKQLVQALQVSLEKEKME---VNS-----------LKEQMAAA-------RIEAGHNRRHFK 1206

  Fly  1364 ----ELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDL 1424
                ||::||..::|:..|...||.:       ||.|:::..|..:|:|      :.||:|:   
Mouse  1207 AATLELSEVKKELQAKEHLVQTLQAE-------VDELQIQDGKHSQEIA------QFQTELA--- 1255

  Fly  1425 QRQKESAQQLEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVK---SVIEAQTKLSDDL 1486
                |:..||:...|..|:...|:.:..|.:::||.|||::.:|:..:|   .:.|.|.|     
Mouse  1256 ----EARTQLQLLQKKLDEQMSQQPTGSQEMEDLKWELDQKEREIQSLKQQLDLTEQQGK----- 1311

  Fly  1487 QRQKESAQQLVDNLKMELDKERKELAQV-KSAIGAQTKLSDDLECQKESVQQLVDNLKVELE--- 1547
             ::.|..||.:..:|.||:..:::|::. |.....|.|:| :|:...:::.|....||::|.   
Mouse  1312 -KELEGTQQTLQTIKSELEMVQEDLSETQKDKFMLQAKVS-ELKNNMKTLLQQNQQLKLDLRRGA 1374

  Fly  1548 -KERKELAKVNSAFEAQTKLSDDLKLQKEDAQREVFLVKERLVKEKREFEVKLATLEDIIETLEM 1611
             |:::...:.||:       |....::..|......|::|.|.......:..|..|.:.::.|:.
Mouse  1375 AKKKEPKGESNSS-------SPATPIKIPDCPVPASLLEELLRPPPAVSKEPLKNLNNCLQQLKQ 1432

  Fly  1612 RC----TQMEEERATAYEQINKLENRCQEKDNVKSSQLQVETFKVECLHHQLKSEMATHNSLVED 1672
            ..    .||||...|.:|.:              ||..|||....|..|.:..:::...||:..|
Mouse  1433 EMDSLQRQMEEHTITVHESL--------------SSWAQVEAAPAEHAHPRGDTKLHNQNSVPRD 1483

  Fly  1673  1672
            Mouse  1484  1483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mudNP_727769.3 SMC_prok_B <224..>467 CDD:274008 50/280 (18%)
SMC_prok_B <576..1365 CDD:274008 184/878 (21%)
SMC_prok_B 994..1863 CDD:274008 173/728 (24%)
Golga3NP_001334318.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..118 14/57 (25%)
Interaction with GOPC. /evidence=ECO:0000250 121..141 7/27 (26%)
Golgi-targeting domain. /evidence=ECO:0000250 172..257 21/105 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 221..321 21/120 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 365..394 6/29 (21%)
YhaN 393..>771 CDD:443752 95/473 (20%)
SMC_prok_B 652..1354 CDD:274008 193/819 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 785..804 4/24 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1372..1396 4/30 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1458..1487 7/26 (27%)

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