DRSC/TRiP Functional Genomics Resources

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Protein Alignment g and APL4

DIOPT Version :9

Sequence 1:NP_524785.2 Gene:g / 44819 FlyBaseID:FBgn0001087 Length:1034 Species:Drosophila melanogaster
Sequence 2:NP_015354.1 Gene:APL4 / 856141 SGDID:S000006233 Length:832 Species:Saccharomyces cerevisiae


Alignment Length:898 Identity:202/898 - (22%)
Similarity:356/898 - (39%) Gaps:194/898 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 RMFDKNLTDLVRGIRNNKDNEAKYISTCIEEIKQELRQDNISVKCNAV--AKLTYIQMLGYDISW 75
            |.|.|:    |||.:...|..| .|:....:|:.:||.|::..:...|  .||.|:.:||....:
Yeast     6 RSFIKD----VRGAKTLADERA-IITKQSAKIRTKLRDDHLPHEKRRVNIQKLLYLYILGEKTHF 65

  Fly    76 AGFNIIEVMSSSRFTCKRIGYLAASQCFHPDSELLMLTTNMIRKDLNSQNQYDAGVALSGLSCFI 140
            .....|.:::|..|..||:|||||:.......:||.|.|||:..||:..|:|...:||:.|....
Yeast    66 GQVESINLIASDDFVDKRLGYLAATLLLDESEDLLTLLTNMLNNDLHHPNKYAVSLALTSLGFLS 130

  Fly   141 SPDLSRDLANDIMTLMSSTK-PYLRMKAVLMMYKVFLRYPEALR----PAFPKL----------- 189
            ||:|:|||..|:..::.::: |:|..||:....|:..:....|.    ....|:           
Yeast   131 SPELARDLYPDVENIIKNSRDPFLLKKALQCAAKLIFKDVSLLEIFNIEDITKILSSHSICTHGV 195

  Fly   190 -----------------KEKLEDPDPGVQSAAVNVICELARKNPKNYLPLAPIFFKLMTTSTNN- 236
                             ::|.||.|......:.:::..|:       |.|...|.:|...::.| 
Yeast   196 LLGVTKIIQSILLIGLNRKKDEDEDEDGIDYSNDILSPLS-------LLLRDFFIRLENMNSKNI 253

  Fly   237 ---------------WMLIKIIKLF---GALTPLEPRLGKK--LIEPLTNLIHST-----SAMSL 276
                           ..:|..:||:   |.|......|..|  ..:.||.:..:|     |..::
Yeast   254 EPGYDVQGICDPFLQCEIIYTLKLYFQVGELLNSNNVLDYKDNFCDLLTRIATNTDSTKNSGQAI 318

  Fly   277 LYECINTVIAVLISISSGMPNHSASIQLCVQKLRIL--------IEDSDQNLKYLGLLAMSKILK 333
            |||.:.|:.::.::                |.||:|        :...|.|.||:.|..:.|::.
Yeast   319 LYETVKTIFSLDLN----------------QPLRVLGINILAKFLAGKDNNTKYVSLNTLLKVVP 367

  Fly   334 THPKSVQAHKDLILACLDDKDESIRLRALDLLYGMVSKKNLMEIVKRLLGHMERAEGSAYRDELL 398
            ..|.:||.|:..|..||.|.|.|||:|||:|.:.::...||:|:|..|:..:.:.:..: :|.::
Yeast   368 QEPTAVQRHRKFISHCLQDTDVSIRMRALELSFAILDDSNLVELVNELMKFLAKQDEDS-KDLII 431

  Fly   399 YKVIEICAQSSYLYVTNFEWYLTVLVELIQLEAGSRHGRLIAEQLLDVAIRVPVVRQFA-VNEMT 462
            |.:..:........|.:..|.|.|...:::| .||   .:..|::.|:.|.:....|.: .:|..
Yeast   432 YTIDHLIDTFDTRVVKDESWKLDVFFNILKL-VGS---FINYEKINDILIIINNTSQLSDKSEFL 492

  Fly   463 NLLDTFTVSAQSNSMYE-------VLYAAAWIVGEFAGEL---EDAEKTLNIL----LRPRLLPG 513
            ..:.|.:::..|..:.|       ||   .|.:||: |:|   |..:...:|:    :...||. 
Yeast   493 RKMLTISLNGTSAEISEENIGWQLVL---IWCIGEY-GDLVLNEGNKNGADIINESSITDYLLT- 552

  Fly   514 HIQGVYVQNVIKLFARLATTCLEL----QDLPGLVTLCDHVLDKLQHFNGSSDIEVQERANSACM 574
             :|.:|....:|:...:.|..|:|    .|...:..|...:|.    :..|:|:.:|.::|.   
Yeast   553 -LQELYTATNLKIINYILTAALKLSVRFHDAKNIEKLRQLILS----YTDSTDLSLQMKSNQ--- 609

  Fly   575 LIEMLRNQLSTSTDAMAMDT---------TTEGGIPPLAIEIVQEMTLLFTGELIPVAPKAQRKV 630
             .|:..|| |.|...:.::|         ..:.| ..|:..::....:....:|:....||:.|.
Yeast   610 -YEIFFNQ-SISVKKIILETMPKFEKITEEQDNG-KALSKNLISNEPVDLLSDLLGEDSKAESKA 671

  Fly   631 PLPDG---LDLDEWI------NAPPPEDAASSSSSEHDKDELFVSATQAGTGADGGEKRRQSLEL 686
            ...|.   :|:.|.|      .|..|::|....|..|.      ||.:|.:|.        :|.|
Yeast   672 STGDNVKPIDILEEIFGEKNDIAQVPKNANKEESINHS------SAVEANSGV--------TLPL 722

  Fly   687 TPEQLERQRMARLIEQSNNPHYLKSTPTASGASNADQYDNIDDIPITELPLDMEGVAALRVGITK 751
            ...        ::.:.|:...|.......||.::.|.|     .....|..|::...|:     .
Yeast   723 DAN--------KIYDSSSLNVYASLLSANSGLAHLDLY-----FQAKSLISDLKTFCAV-----P 769

  Fly   752 RSDKYLQEQ-------QAAQGSKDGKKKHKKGKKSKKAKNKVAYNSSSESEGE 797
            ::.|....|       .|:|..|...|....||...:.|.....|.||....|
Yeast   770 KAQKLTLGQLYPSSTINASQICKQSLKISGSGKLKLRVKLDFHLNGSSSITNE 822

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gNP_524785.2 Adaptin_N 33..578 CDD:279882 146/632 (23%)
HEAT repeat 152..173 CDD:293787 4/21 (19%)
HEAT repeat 185..213 CDD:293787 6/55 (11%)
Cnd1 <193..266 CDD:289487 17/93 (18%)
HEAT repeat 221..263 CDD:293787 11/62 (18%)
HEAT repeat 272..290 CDD:293787 5/17 (29%)
HEAT repeat 302..331 CDD:293787 9/36 (25%)
BLVR 687..840 CDD:283923 22/118 (19%)
APL4NP_015354.1 Adaptin_N 21..617 CDD:396262 149/639 (23%)
Alpha_adaptinC2 727..828 CDD:197886 22/106 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG4354
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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