DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment g and ap2a2

DIOPT Version :9

Sequence 1:NP_524785.2 Gene:g / 44819 FlyBaseID:FBgn0001087 Length:1034 Species:Drosophila melanogaster
Sequence 2:XP_031755830.1 Gene:ap2a2 / 407867 XenbaseID:XB-GENE-486024 Length:1011 Species:Xenopus tropicalis


Alignment Length:1005 Identity:221/1005 - (21%)
Similarity:392/1005 - (39%) Gaps:271/1005 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 KNLTDLVRGIRNNKDNEAKYISTCIEEIKQELRQ-----------DNISVKCNAVAKLTYIQMLG 70
            :.|...:..|||.|..||:     |:.|.:||..           |..|.| ..|.||.:|.:||
 Frog    11 RGLAVFISDIRNCKSKEAE-----IKRINKELANIRSKFKGDKALDGYSKK-KYVCKLLFIFLLG 69

  Fly    71 YDISWAGFNIIEVMSSSRFTCKRIGYLAASQCFHPDSELLMLTTNMIRKDLNSQNQYDAGVALSG 135
            :||.:.....:.::||:::|.|:||||..|...:.:|||:.|..|.|:.||:|:|....|:||..
 Frog    70 HDIDFGHMEAVNLLSSNKYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLSSRNPTFMGLALHC 134

  Fly   136 LSCFISPDLSRDLANDIMTLM--SSTKPYLRMKAVLMMYKVFLRYPEAL--RPAFPKLKEKLEDP 196
            ::...|.:::...|.:|..::  ..|...::..|.|.:.:::...|:.:  .....::...|.|.
 Frog   135 IANVGSREMAEAFAGEIPRILVAGDTMDSVKQSAALCLLRLYRTSPDLVLTNEWTSRVVHLLNDQ 199

  Fly   197 DPGVQSAAVNVICELARKNPKNY---LPLAPIFFKLMTTSTNN-------------WMLIKIIKL 245
            ..||.:||.::|..||:|||:.:   :.||......:.||.:.             |:.:|:::|
 Frog   200 HLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRL 264

  Fly   246 FGALTPLE-PRLGKKLIEPLTNLI-------------HSTSAMSLLYECINTVIAVLISISSGMP 296
            .....|.| |.:..:|.|.|..::             ||.:..::|:|.|:     ||......|
 Frog   265 LQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAIS-----LIIYHDSEP 324

  Fly   297 NHSASIQLCVQKLRILIEDSDQNLKYLGLLAMSKI---------LKTHPKSVQAHKDLILACLDD 352
            |  ..::.|.| |...::..:.||:||.|.:|..:         :|||.::|      |.|...:
 Frog   325 N--LLVRACNQ-LGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETV------INALKTE 380

  Fly   353 KDESIRLRALDLLYGMVSKKNLMEIVKRLLGHMERAEGSAYRDELLYKVIEICAQSSYLYVTNFE 417
            :|.|:|.||:||||.|..:.|..:||..:|.::|.|:.| .|:|::.|| .|.|:.   |..::.
 Frog   381 RDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYS-IREEIVLKV-AILAEK---YAVDYT 440

  Fly   418 WYLTVLVELIQLEAGSRHGRLIAEQLLDVAIRVPVVRQFAVNEMTNLLDTFTVSAQSNSMYE-VL 481
            ||:..::.||:: ||......:..:::.:.|....|:.:|...:...|       |:.:.:| ::
 Frog   441 WYVDTILNLIRI-AGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEAL-------QAPACHENLV 497

  Fly   482 YAAAWIVGEF----AGE-----------LEDAEKTLNILLRPRLLPGHIQGV--------YVQNV 523
            ....:|:|||    ||:           |.......::..|..||..:|:.:        .:|:|
 Frog   498 KVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSAYIKFINLFPEIKTTIQDV 562

  Fly   524 IKLFARLATTCLELQ-----------------------DLPGLVTLCDHVLDKLQHFNGSS---D 562
            ::..::|....:|||                       ::|........:|.||:...|.|   |
 Frog   563 LRSDSQLRNADVELQQRAVEYLRLSSIASNDILATVLEEMPPFPERESSILAKLKKKKGPSTVTD 627

  Fly   563 IE--VQERANSACMLIEMLRNQLSTSTDAMAMDTTTEGGIPPLAIEIVQEMTLLFTGELIPVAPK 625
            :|  .:|::||          .|:..|:...:.||.:......|...|::..|..   |:|....
 Frog   628 LEETKKEKSNS----------DLNGITEHAPLSTTQQPVFEDKATYAVRQRPLSL---LVPTLSS 679

  Fly   626 AQ--------RKVPLPDGLDLDEWINAPPPE------DAASSSSS-------------------- 656
            :|        |...||      ...:.|.|.      .|||.|||                    
 Frog   680 SQSLYSGTSHRVAALP------FCQSTPSPSADLLGLGAASGSSSTPTTAPSAGSLLVDVFAEPS 738

  Fly   657 ------EHDKDELFVSATQAGTGADGGEK-----------------------RRQSLELTPEQLE 692
                  ..:.|:.|.|..|.......||.                       ..|.|::..:...
 Frog   739 LPVAAVTTEADDNFPSDVQTPLEGASGEPDPSVDNAEDFFDKFICKNNGVLFENQLLQIGIKSEF 803

  Fly   693 RQRMARL------------------------IEQSNNPHYLKSTPTASGASNADQYDNID----- 728
            ||.:.|:                        :..|.|.....:.||..|.:...|..|::     
 Frog   804 RQNLGRMFIFFGNKMSSQFQNFTTTLICSDELSASLNLQSKPAEPTIDGGAQVQQVVNVECVQEF 868

  Fly   729 -DIPITELPLDMEGV---AALRVGITKRSDKYLQ-----EQQAAQGSKDGKKKHKKGKKSKKAKN 784
             |:|:..:.....|.   .::::.||  .:|:.|     .|...|..|.....:::.:|..||||
 Frog   869 TDLPLLNIQFRYGGAFQNVSVKLPIT--LNKFFQPTEMNSQDFFQRWKQLSSPNQEVQKIFKAKN 931

  Fly   785 K----------VAYNSSSESEGEPKPLHIV 804
            .          :.:..:.....:|.|.:.|
 Frog   932 PMDTDITKARLIGFGPAVMDNVDPNPSNYV 961

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gNP_524785.2 Adaptin_N 33..578 CDD:279882 159/650 (24%)
HEAT repeat 152..173 CDD:293787 4/22 (18%)
HEAT repeat 185..213 CDD:293787 8/27 (30%)
Cnd1 <193..266 CDD:289487 25/89 (28%)
HEAT repeat 221..263 CDD:293787 11/55 (20%)
HEAT repeat 272..290 CDD:293787 4/17 (24%)
HEAT repeat 302..331 CDD:293787 9/28 (32%)
BLVR 687..840 CDD:283923 28/166 (17%)
ap2a2XP_031755830.1 Adaptin_N 29..591 CDD:396262 146/594 (25%)
HEAT repeat 332..355 CDD:293787 8/23 (35%)
HEAT repeat 369..398 CDD:293787 14/34 (41%)
HEAT repeat 408..434 CDD:293787 10/27 (37%)
Alpha_adaptinC2 789..892 CDD:197886 15/102 (15%)
Alpha_adaptin_C 898..1006 CDD:367023 12/64 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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