DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vcp and TER94

DIOPT Version :9

Sequence 1:NP_001005677.1 Gene:vcp / 448177 XenbaseID:XB-GENE-969573 Length:805 Species:Xenopus tropicalis
Sequence 2:NP_001097249.1 Gene:TER94 / 36040 FlyBaseID:FBgn0286784 Length:826 Species:Drosophila melanogaster


Alignment Length:809 Identity:664/809 - (82%)
Similarity:735/809 - (90%) Gaps:19/809 - (2%)


- Green bases have known domain annotations that are detailed below.


 Frog     5 SDSKSDDLSTAILKQKSRPNRLIVDESINEDNSVVSLSQAKMDELQLFRGDTVLLKGKKRREAVC 69
            |..|.:||:|||||:|.|||||||:|:.|:|||||||||||||||||||||||:||||:|:|.||
  Fly    27 SFDKREDLATAILKRKDRPNRLIVEEAQNDDNSVVSLSQAKMDELQLFRGDTVILKGKRRKETVC 91

 Frog    70 IVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVY 134
            ||||||||.||||||||||||||.|.|.||:|:|.|||||||||:.:||||::.||:||||||:|
  Fly    92 IVLSDDTCPDEKIRMNRVVRNNLCVHLSDVVSVQSCPDVKYGKRVRILPIDESTEGVTGNLFEIY 156

 Frog   135 LKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLN 199
            ||||||||||||..||.|:||..||.:|||||.|||.|||||||:|||.|:|:|||||:||||||
  Fly   157 LKPYFLEAYRPIHMGDNFIVRAAMRPIEFKVVLTDPEPYCIVAPETVIFCDGDPIKREEEEESLN 221

 Frog   200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264
            .|||||||||||||||||||||||||||:||||||||||||||:|||||||||||||||||||||
  Fly   222 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETGA 286

 Frog   265 FFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLL 329
            ||||||||||||||||||||||||||||||||:||||||||:|||||||:|||||||||||||||
  Fly   287 FFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLL 351

 Frog   330 TLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDSTGRLEILQIHTKNMKLSDDV 394
            |||||:|:.:|:|||||||||||||||||||||||||:||||||:|||||:|:||||||||.|||
  Fly   352 TLMDGMKKSSHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEVLRIHTKNMKLHDDV 416

 Frog   395 DLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQS 459
            ||||:|.|:|||||||||:||||||||.||:|||||||||:.|||||:.||||||::||:|:::|
  Fly   417 DLEQIAAESHGHVGADLASLCSEAALQQIREKMDLIDLEDDKIDAEVLASLAVTMENFRYAMTKS 481

 Frog   460 NPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGK 524
            :||||||||||||..||.||||||.||:|||||||||||||||||||||.||:||||||||||||
  Fly   482 SPSALRETVVEVPNTTWTDIGGLESVKKELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGK 546

 Frog   525 TLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN 589
            |||||||||||||||||:||||||||||||||||||:||||||.|||||||||||||||||||||
  Fly   547 TLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCVLFFDELDSIAKARGGN 611

 Frog   590 IGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRI 654
            :||.||||||||||||||||||..||||||||||||||||||||||||||||||||||||:|||.
  Fly   612 VGDAGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDDKSRE 676

 Frog   655 AILKANLRKSPVAKDVDLDFLAKMTNGFSGADLTEICQRACKLAIRESIENEIRRERERQTNP-S 718
            |||||||||||:||:|||.::||:|.||||||||||||||||||||::||.|||||:||..|. |
  Fly   677 AILKANLRKSPLAKEVDLTYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIRREKERAENQNS 741

 Frog   719 AMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFG-SFRFPAGGQGGAG 782
            ||:::||||||||...||||||:|||||||||||||||||||||||||||| :||||    |..|
  Fly   742 AMDMDEDDPVPEITSAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGQNFRFP----GQTG 802

 Frog   783 PSQGAGG-------GSGGSHFNEEEDDLY 804
            .:.|:|.       |..|      :||||
  Fly   803 NTSGSGNNLPVNSPGDNG------DDDLY 825

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vcpNP_001005677.1 CDC48 25..764 CDD:273521 630/739 (85%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 768..805 16/45 (36%)
TER94NP_001097249.1 CDC48 47..787 CDD:273521 630/739 (85%)
CDC48_N 47..129 CDD:280513 66/81 (81%)
CDC48_2 153..213 CDD:215011 44/59 (75%)
AAA 263..392 CDD:278434 118/128 (92%)
AAA 536..669 CDD:278434 125/132 (95%)
Vps4_C <741..783 CDD:286426 34/41 (83%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 263 1.000 Domainoid score I1899
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5168
Inparanoid 1 1.050 1329 1.000 Inparanoid score I148
OMA 1 1.010 - - QHG60945
OrthoDB 1 1.010 - - D169540at33208
OrthoFinder 1 1.000 - - FOG0000137
OrthoInspector 1 1.000 - - oto104632
Panther 1 1.100 - - LDO PTHR23077
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1760
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.080

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