DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment abo and Det1

DIOPT Version :9

Sequence 1:NP_524784.1 Gene:abo / 44793 FlyBaseID:FBgn0000018 Length:539 Species:Drosophila melanogaster
Sequence 2:XP_006229460.1 Gene:Det1 / 308775 RGDID:1309793 Length:550 Species:Rattus norvegicus


Alignment Length:569 Identity:153/569 - (26%)
Similarity:274/569 - (48%) Gaps:77/569 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 KRLQSQNLVHLLQNRESGYTNVGQQPGRMPLLAYERLFYKCITPCLTIDSITIPPIYLRKFTPDG 69
            :|:|:||::|.|:.|.......|....::      |:|::.:.|..|:.::..||.:||||:|||
  Rat    11 RRIQNQNVIHRLERRRISSGRAGTHWHQV------RVFHQNVFPNFTVVNVEKPPCFLRKFSPDG 69

  Fly    70 RKLLAFSQDQRSLLIYSYGGSSCAAVGELIRQADVGSGECFSS----QDTILKSRIFERLFPTKE 130
            |..:|||.||.||.||.|.|  |.|..:|::..:   ||..|:    :...::.|:|||.|....
  Rat    70 RYFIAFSSDQTSLEIYEYQG--CQAAEDLLQGYE---GEILSNGNDQRSVSIRGRLFERFFVLLH 129

  Fly   131 TLNL-CQGDFGLYYLHREFSVFLEEGRYAMLAAMTVVRGALPVDDYVRYPDLFDKVDAFS----- 189
            ..|: ..|:    :|:||.|:|.::.|..::.:...    ||.:.:..:.:::...::.:     
  Rat   130 ITNVAANGE----HLNRECSLFTDDCRCVIVGSAAY----LPDEPHPPFYEVYRNSESVTPNPRS 186

  Fly   190 ----YVFFLVDLKLGVVTDRLILPNDSIVIAHNHGISVFGSTVMMMSRLHQCVYVYWVN-DGKFH 249
                |...::||..|.:.|......|.:|::||.|:.::.:.:.::|...|.::|:.|. :|.|.
  Rat   187 PLEDYSLHIIDLHTGRLCDTRTFKCDKVVLSHNQGLYLYKNILAILSVQQQTIHVFQVTPEGTFI 251

  Fly   250 QQETIGPRPRDFIEKATTDFDNLDATTVLP------------------ITHIKQRVLSFLYRKIN 296
            ...|||        :...:.|.|..:.|.|                  |..:|.|:|.:|:|:. 
  Rat   252 DVRTIG--------RFCYEDDLLTVSAVFPEVQRDSQTGMANPFRDPFINSLKHRLLVYLWRRA- 307

  Fly   297 DKSGNPTESQKSFYKNFEYIEHMIMERMHLVNNELLMLRYEERPNGTDTMPM-ATSPRR--LYVF 358
            ::.|: ..:::.|::.|:.:..:.|.:|.|::...|.::|    ...|.:.: .|.|.:  .:|.
  Rat   308 EQDGS-AMAKRRFFQYFDQLRQLRMWKMQLLDENHLFIKY----TSEDVVTLRVTDPSQASFFVV 367

  Fly   359 YTITGEEVVGVYPEYSVNLLQILLQFNDYMSN---DRSLQFG-DAPSLPMHFFLRHTFADSNESV 419
            |.:...||:.|:...|..||::...|.|...|   ...:||. .|.|......::..|.|:..:.
  Rat   368 YNMVTTEVIAVFENTSDELLELFENFCDLFRNATLHSEVQFPCSASSNNFARQIQRRFKDTIINA 432

  Fly   420 SVDRHT--ALRFNPSVPLSSQSLSSSPYLKFNEFRYDSRYVSPLEQPHRCCNDPIVFLDRATDSI 482
            ....||  ..|....:|:|:||.|.||||..:.|.||.::||.:|:|..|.:.||.|..|.:..:
  Rat   433 KYGGHTEAVRRLLGQLPISAQSYSGSPYLDLSLFSYDDKWVSVMERPKTCGDHPIRFYARDSGLL 497

  Fly   483 KFRLHA-TARRHLNPLAPRELCAFIWHPFDPLVLSIQKCMNSYVYHVHL 530
            ||.:.| ...|.:|... |.|.||.:|||:|..:|:|:....||.:.|:
  Rat   498 KFEIQAGLLGRPINHTV-RRLVAFTFHPFEPFAISVQRTNAEYVVNFHM 545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
aboNP_524784.1 Det1 146..531 CDD:286780 106/423 (25%)
Det1XP_006229460.1 Det1 142..546 CDD:401616 106/423 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350968
Domainoid 1 1.000 123 1.000 Domainoid score I5476
eggNOG 1 0.900 - - E1_KOG2558
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 187 1.000 Inparanoid score I3819
OMA 1 1.010 - - QHG60266
OrthoDB 1 1.010 - - D272605at33208
OrthoFinder 1 1.000 - - FOG0007100
OrthoInspector 1 1.000 - - oto98405
orthoMCL 1 0.900 - - OOG6_105528
Panther 1 1.100 - - LDO PTHR13374
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X5186
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1413.810

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