DRSC/TRiP Functional Genomics Resources

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Protein Alignment eEF1gamma and vars1

DIOPT Version :9

Sequence 1:NP_001189308.1 Gene:eEF1gamma / 44791 FlyBaseID:FBgn0029176 Length:431 Species:Drosophila melanogaster
Sequence 2:XP_002939512.3 Gene:vars1 / 100489760 XenbaseID:XB-GENE-487344 Length:1243 Species:Xenopus tropicalis


Alignment Length:434 Identity:113/434 - (26%)
Similarity:173/434 - (39%) Gaps:103/434 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 LSESN-------AIAYLLANEQLRGGKCPFVQAQVQQWISFADNEIVPASCAWVFPLLGILPQQK 123
            ||.||       |::|:||.|.|.||..|...|.|:||:|:|::|::||       :.|....|.
 Frog    49 LSPSNEPVWGSWAVSYMLAPEALSGGCDPCSGALVKQWVSYAESELLPA-------VYGAERSQT 106

  Fly   124 NSTAKQEAEAVLQQLNQKLQDATFLAGERITLADIVVFSSLLHLYEYVLEPSVRSAFGNVNRWFV 188
            ...:..|.:.:|..|:..|:..|:|.||.|:||||.|...|:..|..||.|:.|....||.|||.
 Frog   107 KDRSLLELQKILDSLDFYLRLRTYLVGESISLADIAVACCLISPYTKVLSPTRREKLLNVTRWFQ 171

  Fly   189 TILNQKQVQAVVKDYKLCEKALVFDPKKYAEFQAKTGAAKPQQQAQQQKQEKKPKEKKEAPKKAA 253
            |.:||:|.:.::.:....:..:.  ..|.::..:.|.:..|.:.|.|.|:|.|.|||.|..::..
 Frog   172 TCINQQQFKDILGEVNFLKTDVA--ASKTSDGPSGTPSNAPPKTAAQLKKESKKKEKLERFQQKQ 234

  Fly   254 EPAEELDAADEALAAEPKSKDPFDALPKGTFNFDDFKRVYSNEDEAKSIPYFFDKFDAEN--YSI 316
            |..:||....:   .:|:.||..:.   |...:|........:|.:..:|..:.....|:  ||.
 Frog   235 EKIKELQGEKK---PKPEKKDKKEL---GVITYDIPTPAGDKKDVSGPMPDSYSPQYVESAWYSW 293

  Fly   317 W---------FGEYKYNEELSK-VFMSC-----------------NLITGMFQRLDKMR------ 348
            |         ||....:|...| :||.|                 |.|.....|..:||      
 Frog   294 WEKEKFFKPEFGRSSISEPNPKGLFMMCIPPPNVTGSLHLGHALTNAIQDCLTRWHRMRGELTLW 358

  Fly   349 -----KAAFASVCL---------------FGEDGNSTISGIWVW---RGQDLAFTL-----SPDW 385
                 .|..|:..:               ||.:  :.|..:|.|   :|..:...|     |.||
 Frog   359 NPGCDHAGIATQVVVEKKLWRERGKTRHDFGRE--NFIEEVWKWKREKGDRIYHQLRILGSSLDW 421

  Fly   386 QIDYEVYDWKKLDAKSE------------ETKKLVTQYFSWSGT 417
            .......|.|...|..|            .:|:||    :||.|
 Frog   422 DRTCFTMDPKLSFAVQEAFIRLHEAGIIYRSKRLV----NWSCT 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eEF1gammaNP_001189308.1 GST_N_EF1Bgamma 4..79 CDD:239342 8/19 (42%)
GstA 5..187 CDD:223698 47/127 (37%)
GST_C_EF1Bgamma_like 90..209 CDD:198290 40/118 (34%)
EF1G 271..376 CDD:279041 30/162 (19%)
vars1XP_002939512.3 GST_C_family 79..192 CDD:413470 40/119 (34%)
PTZ00419 263..1242 CDD:240411 40/205 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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