DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment msk and MTREX

DIOPT Version :9

Sequence 1:NP_524780.1 Gene:msk / 44747 FlyBaseID:FBgn0026252 Length:1049 Species:Drosophila melanogaster
Sequence 2:NP_056175.3 Gene:MTREX / 23517 HGNCID:18734 Length:1042 Species:Homo sapiens


Alignment Length:534 Identity:104/534 - (19%)
Similarity:185/534 - (34%) Gaps:167/534 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   171 PLNEAMNLLLPMIYQLMVRLLAEQSEQSVLLQKQILKIYYALTQYTLPLDLITKEIFSQWMEICR 235
            |||.|.:|...|:..|   |..|:.....:|:|.    :|....|.....::.|...|:     .
Human   558 PLNSAFHLTYNMVLNL---LRVEEINPEYMLEKS----FYQFQHYRAIPGVVEKVKNSE-----E 610

  Fly   236 QVADRAVPDSSHLDDDERTEFPYWKTKKWALHIMVRMFERY----------GSPSNVVSEKYQKF 290
            |.....:|       :|.:...|:|.:: .|..:.:..|.|          ..|..:|..|.:. 
Human   611 QYNKIVIP-------NEESVVIYYKIRQ-QLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNEG- 666

  Fly   291 AEWYLPTFSQGVLEVLLKILDQYRNRVYVSPRVLTDVL-----NYLKNAVSHAYTWKLIKP---- 346
                 ..|..||:....|..:...|...:.|..:.:||     ..|||:.:.|.  |..||    
Human   667 -----DDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAA--KPAKPDEKG 724

  Fly   347 ---------HMVAVIQDV-------IFPI---MSFTDSDQELWES--------DPYEYIRL---- 380
                     |:::.|..|       :.|:   .|...|.||:.:.        ||.:.:.:    
Human   725 EMQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGIPLLDPIDDMGIQDQG 789

  Fly   381 ------KFDIFED--YATPVPAAQSL--LHSMCKKRKGI----------LPKAMATIMQIITSPN 425
                  |.:.||.  |:.|:....:|  ::::|:|:..|          |.|| .|::|:     
Human   790 LKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKA-RTVLQM----- 848

  Fly   426 ADNKQKDGALHMIG--TLADVLLKKASYRDQVESMLTTYVFPEFQNPAGHMRARACWVLHYFCDV 488
            .:.|.:...|..:|  |.:||:                           .|:.|..      |::
Human   849 DELKCRKRVLRRLGFATSSDVI---------------------------EMKGRVA------CEI 880

  Fly   489 QIKNPQVLAEIMRLTTNALLTDKELPVKVEAAIGLQ---MFISSQDEAPQYVE------AQIKEI 544
            ...:..:|.|:|   .|.|..|    :..|.|..|.   :|..:..|.|:..|      .|::|.
Human   881 SSADELLLTEMM---FNGLFND----LSAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQEC 938

  Fly   545 TKELLTIIRETENEDLTNVMQKIVCTFTEQLLPVATEICQHLAT--TFSQVLESEEGSDEKAITA 607
            .|.:..:..|.:.|    :.::   |:.....|...::....||  ||:.:.:..:..:...|..
Human   939 AKRIAKVSAEAKLE----IDEE---TYLSSFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRC 996

  Fly   608 MSLLNTIETLLSVM 621
            |   ..:|.||..|
Human   997 M---RRLEELLRQM 1007

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mskNP_524780.1 SXM1 4..1013 CDD:227943 104/534 (19%)
IBN_N 24..103 CDD:281761
MTREXNP_056175.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 16..74
Dob10 68..1042 CDD:226947 104/534 (19%)
DEAD 144..287 CDD:278688
DEIH box 252..255
HELICc 374..538 CDD:238034
rRNA_proc-arch 584..840 CDD:289976 51/280 (18%)
DSHCT 868..1035 CDD:285374 35/190 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG4581
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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