DRSC/TRiP Functional Genomics Resources

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Protein Alignment msk and Ddx60

DIOPT Version :10

Sequence 1:NP_524780.1 Gene:msk / 44747 FlyBaseID:FBgn0026252 Length:1049 Species:Drosophila melanogaster
Sequence 2:NP_001280712.1 Gene:Ddx60 / 234311 MGIID:2384570 Length:1710 Species:Mus musculus


Alignment Length:611 Identity:118/611 - (19%)
Similarity:220/611 - (36%) Gaps:190/611 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   517 VEAAIGLQMFISSQDEAPQYVEAQIKEITKELLTIIRETENEDLT--------NVMQKIVC---T 570
            ::::.|:|||....       :..|..:.|.|:..:.:..:..|.        |.|::.||   :
Mouse   189 MQSSHGMQMFFKEN-------KRMIMIVYKSLIQQLEKYRDMALAHLFGDLKFNDMEEKVCETVS 246

  Fly   571 FTEQLLPVATEI-CQHLATTFSQVLE--------SEEGSDEKAITAMSLLNTIETLLSVMEEHPD 626
            ..:||.|..::| |....|:.|..||        .|:|:.|:........:...||.. ||:   
Mouse   247 LLKQLWPEGSDIRCVFCVTSCSLFLEMYHCYLESREKGASEEMSKVKQKTDNCLTLKD-MED--- 307

  Fly   627 VLLNLHPIVINVVGHI--------------------------------FQHNITDFYEETFSLVY 659
             ...||.:.:.::.|:                                ...|:..|...:.:|::
Mouse   308 -FCKLHCLSVALLLHVPLSQRARSRFITANWIQDLKTVLKMKKWCEYFILSNLDMFESWSLNLLH 371

  Fly   660 --DLTAKAISPEMWQMLELIYQVFKKDGIDYFIDIMPALHN-YVTV-DTPAFLSNPNRLLAILDM 720
              ||:    ...:.:.:...|:...|:|:|  :::..|:.| ||.: ||      .::|:...|:
Mouse   372 LSDLS----DEPLLRNIAFYYENENKEGLD--LNVGDAIMNEYVHLWDT------VSKLVRKFDV 424

  Fly   721 CKTM-----------LTSSPGEDPECHAAKLMEVIILQCK------GQI--DSVIHMFVELALSR 766
            .|.:           .|.||.::........:..|.:.|.      |.|  |....|..:..::.
Mouse   425 GKPIPLRTTKVHFLEKTPSPIKESSQEMMPNLGFIPMSCNLVDEFTGDILKDLPFLMSDDPIVTS 489

  Fly   767 LTREVQSSELRTMCLQVVIAALYYNPQLLLSILDKMSQQNNDSISAHFIK--QWLHDTDCFL--- 826
            |.:..:..||          ..:::.:.|....|:....:.|....:.:|  |..|....|.   
Mouse   490 LVKHKEFDEL----------VHWHSHRPLSDDYDRTKVNSGDRRDPNHLKRLQKYHSFQRFYGES 544

  Fly   827 ------------GIHDRKLCVLGLCTLISLGEAKPQVLSEVAGKIVPALILLFDGLKRAYESRAQ 879
                        |...:|.|:....|  ...|.|.::                  :||..:.|..
Mouse   545 LESVTSKTITTQGPKPKKDCIKSKST--KAHETKAEI------------------IKRENKKRLI 589

  Fly   880 EEEEDEEEEDGDDCEEALS-SDEDDMDEMAPDYLDKLAEFAKTKGNESGFEVKAEIKDDDADSDG 943
            .|||.:||:..:    ||| |.|::|.:.....:.||.||.|:..:.|   |||::         
Mouse   590 AEEEQKEEQKWN----ALSFSIEEEMRKNVDSGMKKLEEFLKSCKSRS---VKAQV--------- 638

  Fly   944 DAEESVGDLNETGLESFTTPIDDEENESAIDEYWTFKEVITALSAQDQAWYALLTSNLTPEQAKA 1008
               |.||  .:..|:::      :|:..|..|  |.|::..|::...:      ..:|..:.::.
Mouse   639 ---ERVG--LQACLKAW------KEHCQAEGE--TTKDLSIAVNMMKR------IHSLLDKHSEL 684

  Fly  1009 LQEVVVTADQRKAAKESKLIEKQGGF 1034
            |||    |||:..|:..|.:    ||
Mouse   685 LQE----ADQKLIARCLKYL----GF 702

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mskNP_524780.1 SXM1 4..1013 CDD:227943 111/588 (19%)
Ddx60NP_001280712.1 DEXHc_DDX60 761..938 CDD:350783
BRR2 766..1440 CDD:440817
Blue background indicates that the domain is not in the aligned region.

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