DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment msk and skih-2

DIOPT Version :9

Sequence 1:NP_524780.1 Gene:msk / 44747 FlyBaseID:FBgn0026252 Length:1049 Species:Drosophila melanogaster
Sequence 2:NP_502084.2 Gene:skih-2 / 178017 WormBaseID:WBGene00008502 Length:1266 Species:Caenorhabditis elegans


Alignment Length:1126 Identity:202/1126 - (17%)
Similarity:381/1126 - (33%) Gaps:359/1126 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 AQKLTELLRATIDPNPEQRKAAEDQLAQIH---KIIGFVPTILQIVMQTTVEQPVRQAGAVYLKN 64
            |..|..||: .||       |..:.:||:.   ||||||.....||........:.:| ....::
 Worm    43 ADNLDSLLQ-PID-------APANIIAQVDSNGKIIGFVENERIIVGSANTSMSINRA-PYKQRS 98

  Fly    65 LINSSWSDHEAKPGEPIPF---SIHEQDRAMIRGAIVDAIVHAPE---------------LIRVQ 111
            |..::.:..:..||. :||   .:.|.| .::.|..........|               :..:.
 Worm    99 LHTTAGNSIKGSPGN-VPFLPGFLEELD-DLLAGETTAKSTSGEESKFLSFKDDATLLNTIPTIG 161

  Fly   112 LSVCVNH-IIKSDFPGRWPQVV--------DSISIYLQNQDVNGWNGALVTMYQLVKTYEYKRHE 167
            ..|..|| .:|.  |...|:.:        |.:.:...|:.:.....|.|...:.:::.|....:
 Worm   162 QIVLPNHSSVKK--PAETPKSINIEEMDMFDLLDMVTSNEYIIHTVAAPVKKSESIESEETPEDD 224

  Fly   168 ERTPLNEAMNLLLPMIYQLMVRLLAEQSEQSVLLQKQILKIYYALTQYTLPLDLITKEIFSQWME 232
            ::...||...:.:|:|        ...:|       ::::|:.|.|:   |    |||.|     
 Worm   225 KKVSENEIDEIEIPII--------PGNTE-------KVIEIFGAATE---P----TKEKF----- 262

  Fly   233 ICRQVADRAVPDSSHLDDDER------TEFPY---------------------------WKT--K 262
               :.|.|.|..:...|:.:|      .::|:                           .||  .
 Worm   263 ---EFAQRLVLSADEEDEYKRLVPTMARKYPFSLDPFQQSSVLCMERGESLFVAAHTSAGKTVVA 324

  Fly   263 KWALHIMVRMFER--YGSPSNVVS-EKYQKFAEWY----LPTFSQGVLEV------LLKILDQYR 314
            ::|:.:......|  |.||...:| :|::.|.:.:    |.|   |.:::      |:...:..|
 Worm   325 EYAIALCQAHKTRAVYTSPIKALSNQKFRDFKQIFGDVGLVT---GDIQLHPEAACLIMTTEILR 386

  Fly   315 NRVYVSPRVLTDV-------LNYLKNAVSHAYTWK----LIKPHMVAVIQDVIFP-IMSFTDSDQ 367
            :.:|....|:.|:       ::|:.|. ...:.|:    ::..|:..|:.....| .:.|.|   
 Worm   387 SMLYNGSEVIRDLEWVVFDEVHYINNE-ERGHVWEEVLIMLPAHVKIVMLSATVPNCVEFAD--- 447

  Fly   368 ELWESDPYEYIRL---KFDIFEDYATPVPAAQSLLHSMCKKRKGILPKAMATIMQIITSPNAD-- 427
              |..      |:   |.::......|||....|......|.:..|.|.:....|.|.....|  
 Worm   448 --WVG------RIKNRKINVISTDRRPVPLEHFLYTGQDGKTQKDLFKIIDRSGQFILKGYNDAK 504

  Fly   428 -------NKQKDGALHMIGTL---------------------ADVLLKKASY---RDQVESMLTT 461
                   .|:|.|.....||.                     .::.|...:|   .||:.  :..
 Worm   505 DSKAKIYEKEKAGGAGGRGTQRGGGRGGGGNGGGRNWPGKNDKNIYLNLINYMKCSDQLP--MVV 567

  Fly   462 YVFPEFQNPAGHMRARACWVLHYFCDVQIKNPQVLAEIMRLTTNALLTDKELPVKVEAAIGLQMF 526
            :||         .|.|        ||   :|.|:||. |.|||..    ::..|::..:..:|..
 Worm   568 FVF---------SRKR--------CD---ENAQMLAS-MNLTTEV----EKQHVRLFFSQCVQRL 607

  Fly   527 ISSQDEAPQYV-------------EAQIKEITKELLTIIRETENEDLTNVMQK--IVCTFTEQLL 576
            ..|..|.||.:             .:.|..|.||::.::           .||  :...|..:..
 Worm   608 KGSDKELPQVLTMRDLCLRGFAVHHSGILPILKEVVELL-----------FQKGYVKILFATETF 661

  Fly   577 PVATEI---CQHLATTFSQVLESEEGSDEKAI-----TAMS------LLNTIETLLSVMEE---- 623
            .:...:   |    ..|..::: .:|::.:.:     |.|:      .|:...|::.:.::    
 Worm   662 AMGVNMPARC----VVFDSIMK-HDGTERRMLNPGEYTQMAGRAGRRGLDLTGTVIIICKDSTVP 721

  Fly   624 HPDVLLNLHPIVINVVGHIFQHNITDFYEETFSLVYDLTAKAISPEMWQMLELIYQVF------- 681
            .||||.||      :.|...:      .|..|.:.|.:....:..|..::.:::.:.:       
 Worm   722 QPDVLKNL------ISGQALR------LESKFRVTYSMILNLLRVEQLKIEDMLQRSYVESDSLR 774

  Fly   682 -KKDGIDYFIDIMPALHNYVTVDTPAFLSNPN-RLLAILDMCKTMLTSSPGEDPECHAAKLMEVI 744
             .|:.....:|...|:....|::...  .:|| :|....|.....|..|....|:.:...::..:
 Worm   775 ESKEKRKSLVDTKNAIQTMSTIECST--CSPNSQLRDYHDALAVFLRKSEHIWPKLNDENVINKL 837

  Fly   745 ILQCKGQIDSVIHMFVELALSRLTRE--VQSSELRTMCLQVVIAALYYNPQLLLSILDKMSQQNN 807
            :  |.|:.     :.|..|..:|..|  :...||....||:::|:           .|.....|.
 Worm   838 L--CSGRF-----LIVNSAQQQLQNECVLLIKELNNKTLQILVAS-----------ADADETTNK 884

  Fly   808 DSISAHFIK------QWLHDTD---------------CFLGIHDRKLCVLGLCTLISL------- 844
            ::.:..|.|      .||.:.:               |...|...:||.:.|..::::       
 Worm   885 NAAAIGFSKLPKSELSWLTEENSLLSTSKFGTRGAAHCSTNIRSFRLCEIPLSGIVAVMKKCAKG 949

  Fly   845 ---GEA------------KPQVLSEVAGKIVPALILLFDGLKRAYESRAQEEEEDEEEEDGDDCE 894
               ||.            :.:.|||...|::..:.....|||      :.|.|....:|.|..|:
 Worm   950 VQSGEILQEYNMTQIPRFRDRELSENVKKLLQQITTAVPGLK------SGEIETYTWKELGSFCQ 1008

  Fly   895 EALSSDEDDMDEMAPDYLDKL 915
            ...:|.:.|:       |:||
 Worm  1009 NLDTSFDTDL-------LEKL 1022

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mskNP_524780.1 SXM1 4..1013 CDD:227943 201/1125 (18%)
IBN_N 24..103 CDD:281761 19/84 (23%)
skih-2NP_502084.2 DEXDc 287..472 CDD:214692 33/199 (17%)
DEAD 295..440 CDD:278688 23/148 (16%)
HELICc 612..704 CDD:197757 15/107 (14%)
KOW <1017..1065 CDD:294253 4/13 (31%)
DSHCT 1093..1257 CDD:285374
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG4581
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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